View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15896_high_1 (Length: 749)
Name: NF15896_high_1
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Complemental strand, 2021646 - 2021031
Alignment:
| Q |
10 |
agaagcataggaaagctcaaaggatcctcaacatcataagcatcatcatcaatcataggcttcaacttcttaaccttgatccaaaagcatccaagacaaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021646 |
agaaccataggaaagctcaaaggatcctcaacatcataagcatcatcatcaatcataggcttcaacttcttaaccttgatccaaaagcatccaagacaaa |
2021547 |
T |
|
| Q |
110 |
gaacaagccgatccaaagattgaatcaagaacaaaacaatacaaaatttggacacaaacaaaaccaaaggagcaacataatcttctctaaaagaaatcca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021546 |
gaacaagccgatccaaagattgaatcaagaacaaaacaatacaaaattttgacacaaacaaaaccaaaggagcaacataatcttctctaaaagaaatcca |
2021447 |
T |
|
| Q |
210 |
aaccatataaaaccattgcaaaagattcttaacttcccaaggttgaatcacatgcaaattccattgattaaaatgagcaatgatttcaacaaccaaagca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021446 |
aaccatataaaaccattgcaaaagattcttaacttcccaaggttgaatcacatgcaaattccattgattaaaatgagcaatgatttcaacaaccaaagca |
2021347 |
T |
|
| Q |
310 |
acaattgaaagtacaagaaacactttgatgaatctatataaccttgttgtgttcttaggattttcatcaccaatatcagataatgaaactctctttttga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021346 |
acaattgaaagtacaagaaacactttgatgaatctatataaccttgttgtgttcttaggattttcatcaccaatatcagataatgaaactctctttttga |
2021247 |
T |
|
| Q |
410 |
ccaatgaaaaagttgatttgagaccattggtcaaccatgtcaaacatgtcagaagtttgtgaagtttaaggagaataacccaagtaaactgttttgtact |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2021246 |
ccaatgaaaaagttgatttgagaccattggtcaaccatgtcaaacatgtcagaagtttgtgaagtttaaggagaataacccatgtaaactgttttgtact |
2021147 |
T |
|
| Q |
510 |
tgtagannnnnnnngcttctcttgaaacattggagaatccaaaccatcatcatgaacatgtaacaaagtaaaatcattaactttgtcagttgcatttgta |
609 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021146 |
tgtagattttttttgcttctcttgaaacattggagaatccaaaccatcatcatgaacatgtaacaaagtaaaatcattaactttgtcagttgcatttgta |
2021047 |
T |
|
| Q |
610 |
actgtgtttggtgcca |
625 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2021046 |
actgtgtttggtgcca |
2021031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 654 - 736
Target Start/End: Complemental strand, 2020999 - 2020917
Alignment:
| Q |
654 |
gtcgtcaaaaccaaaaatctaaagattgaatttttacgttaatggaagaaaatttagagaattttcttcaacatcattgatga |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2020999 |
gtcgtcaaaaccaaaaatctaaagattgaatttttacgttaatggaagaaaatttagagaattttcttcaacatcattgatga |
2020917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University