View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_high_12 (Length: 419)

Name: NF15896_high_12
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_high_12
NF15896_high_12
[»] chr7 (1 HSPs)
chr7 (9-408)||(19806341-19806743)
[»] chr2 (30 HSPs)
chr2 (199-410)||(39136173-39136384)
chr2 (1-211)||(39135939-39136149)
chr2 (99-406)||(39474250-39474560)
chr2 (267-407)||(39458169-39458309)
chr2 (221-408)||(39422460-39422647)
chr2 (221-408)||(39416343-39416530)
chr2 (311-408)||(39129487-39129584)
chr2 (59-206)||(39422722-39422869)
chr2 (1-213)||(39416559-39416789)
chr2 (221-408)||(39488161-39488348)
chr2 (310-391)||(39601994-39602075)
chr2 (306-408)||(39151897-39151999)
chr2 (321-407)||(39123536-39123622)
chr2 (305-375)||(44623617-44623687)
chr2 (307-379)||(39214925-39214997)
chr2 (307-383)||(39450499-39450575)
chr2 (1-64)||(39488406-39488469)
chr2 (267-381)||(27154981-27155095)
chr2 (310-379)||(39382213-39382282)
chr2 (311-388)||(39495534-39495611)
chr2 (307-379)||(39199482-39199554)
chr2 (307-379)||(39399013-39399085)
chr2 (307-378)||(39220162-39220233)
chr2 (320-379)||(39391666-39391725)
chr2 (313-355)||(39479182-39479224)
chr2 (6-64)||(39877634-39877692)
chr2 (307-377)||(44614473-44614543)
chr2 (6-46)||(39457788-39457828)
chr2 (319-379)||(39161102-39161162)
chr2 (319-379)||(39208032-39208092)
[»] chr8 (2 HSPs)
chr8 (306-377)||(44951384-44951455)
chr8 (100-136)||(32984770-32984806)
[»] chr5 (1 HSPs)
chr5 (320-379)||(33559636-33559695)
[»] chr6 (1 HSPs)
chr6 (311-349)||(16112428-16112466)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 19806341 - 19806743
Alignment:
Q  9 tttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatga---------tgatgatgatgctttatcagcaaggtttcata 99  Q
    |||||||||||  ||||||| |||||||||||||||||||| |||||||||||||| ||         |||||||||| ||||||||  | |||||||||    
T  19806341 tttaaatggctcacatcatttgataaaaatacatcgcaatcagcttctcgtgaagaagaagaagaagatgatgatgatactttatcattatggtttcata 19806440  T
Q  100 agaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacata 199  Q
    |||||||| |||||||||||||| |||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  19806441 agaagaggcatacaactacactgccagtcaagagggtatccgatgtcaacaattccttgtgtggttcgatgaagaaatccaaggtgtctccaacaccata 19806540  T
Q  200 tgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagc 299  Q
    |||||||| |   | |      |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19806541 tgatgatgttcctgcc------atgtcaactgataaatcattttccacactcaaagaagaacttgtgttggtagaaaaatcatttgaggatatcagaagc 19806634  T
Q  300 aagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||    
T  19806635 aagacacaagtagaagagaggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaaaaaggaaattagttatgttg 19806734  T
Q  400 gaagaatta 408  Q
    | |||||||    
T  19806735 ggagaatta 19806743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 199 - 410
Target Start/End: Original strand, 39136173 - 39136384
Alignment:
Q  199 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136173 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 39136272  T
Q  299 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136273 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 39136372  T
Q  399 ggaagaattatc 410  Q
    ||||||||||||    
T  39136373 ggaagaattatc 39136384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39135939 - 39136149
Alignment:
Q  1 acttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatgatgatgatgatgctttatcagcaaggtttcataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39135939 acttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaagatgatgatgatgatgctttatcagcaaggtttcataa 39136038  T
Q  101 gaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  39136039 gaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattccttgtgtggttcgatgaagaaatccaaggtgtctccaacaccatat 39136138  T
Q  201 gatgatgatga 211  Q
    |||||||||||    
T  39136139 gatgatgatga 39136149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 99 - 406
Target Start/End: Complemental strand, 39474560 - 39474250
Alignment:
Q  99 aagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacat 198  Q
    |||||||||| ||| |  |||||| | |||||||||||||| ||| |||||| ||| ||||| |||| ||||||||||||||||||||| |||||| |||    
T  39474560 aagaagaggggtactatcacactgcctgttaagagggtatttgataacaacagttccttgtgcggtttgatgaagaaatccaaggtgtccccaacatcat 39474461  T
Q  199 atgatgatgatgacgacgac---gacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcag 295  Q
    ||||||||||||| || |     | ||||||||| ||||||||||||||| |||||||  || ||||||  || |||||||||||||||||||||  |      
T  39474460 atgatgatgatgatgatgttcctgccatgtcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgcca 39474361  T
Q  296 aagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggat 395  Q
    ||| | ||| ||| ||||| ||  ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||  ||    
T  39474360 aaggacgacgcaaatagaaaaggagagattgcattccataaagagagatattgaggagtgctccgaagagcttgaaaataagaaaaagaaaattagtcat 39474261  T
Q  396 gttggaagaat 406  Q
    |||||||||||    
T  39474260 gttggaagaat 39474250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 407
Target Start/End: Original strand, 39458169 - 39458309
Alignment:
Q  267 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 366  Q
    ||||||||||||||||||||||||  || ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39458169 ttggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatc 39458268  T
Q  367 ttgaaaataagaaaaaggaaattagggatgttggaagaatt 407  Q
    ||||||| ||||||||||||| ||   ||||||||||||||    
T  39458269 ttgaaaacaagaaaaaggaaactatttatgttggaagaatt 39458309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 408
Target Start/End: Complemental strand, 39422647 - 39422460
Alignment:
Q  221 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagc-aagacacaagtagaagagag 319  Q
    |||||||| ||||  |||||||||| |||||||| || ||||||  || |||||||||||||||||||| ||  ||||  || | | ||||||||||||     
T  39422647 catgtcaattgatctatcattttcctcactcaaaaaacaacttgcatttgtagaaaaatcatttgagga-atgtgaagggaaaagagaagtagaagagaa 39422549  T
Q  320 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 408  Q
    || |||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||    
T  39422548 gatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataagaaaaaggaaattagtgatgttggaagaatta 39422460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 221 - 408
Target Start/End: Complemental strand, 39416530 - 39416343
Alignment:
Q  221 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 320  Q
    ||||||||||||||||||| |||||  ||||||| || ||||||  ||  |||||||||||||||||||   ||||||  | |  ||||||||| ||| |    
T  39416530 catgtcaactgataaatcaatttccgaactcaaaaaagaacttgcatttatagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaag 39416431  T
Q  321 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 408  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||  |||||||||||||||    
T  39416430 agattgcattccataaagagagatattgaggagtgctgcagagaacttgaaaataagcaaaaggaaattagttatgttggaagaatta 39416343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 39129487 - 39129584
Alignment:
Q  311 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 408  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||| |||||||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaatatgaaaaaggaaattagtgatgctggaagaatta 39129584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 39422869 - 39422722
Alignment:
Q  59 tgaagatgatgatgatgatgctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttg 158  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| |  |||||| | ||||||| |||||  ||| |||||| ||| |||    
T  39422869 tgaagatgatgatgatgttcctttgtcagcaaggtttcctaagaagagggatactatcacactgcctgttaagaaggtatctgataacaacagttccttg 39422770  T
Q  159 tgtggttcgatgaagaaatccaaggtgtctccaacaacatatgatgat 206  Q
    || |||| ||||||||||||||||||||| || ||| |||||||||||    
T  39422769 tgcggtttgatgaagaaatccaaggtgtccccgacaccatatgatgat 39422722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 39416789 - 39416559
Alignment:
Q  1 acttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga---------------tgatgatgatgatg---cttt 82  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||               ||||||||||||||   ||||    
T  39416789 acttcaattttaaatggcttgcatcattcgataaaaaaacatcgcattcagcttcacgtgaagactttgaatctgatgatgatgatgatgatgttccttt 39416690  T
Q  83 atcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaag 182  Q
     ||||||||||||  ||||||||||| | | ||||||||| || ||||||||| ||| ||| |||||||||| || ||| ||| ||||||||||||||||    
T  39416689 gtcagcaaggtttgctaagaagaggggtgctactacactgccaattaagagggcatttgataacaacaattccttatgttgtttgatgaagaaatccaag 39416590  T
Q  183 gtgtctccaacaacatatgatgatgatgacg 213  Q
    ||||| || | | ||||||||||| ||||||    
T  39416589 gtgtccccgaaaccatatgatgataatgacg 39416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 221 - 408
Target Start/End: Complemental strand, 39488348 - 39488161
Alignment:
Q  221 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 320  Q
    ||||||| |||| ||||||||||||   || ||| || ||||||  ||||||||||  |||||||||||   || ||| || |  |||||||||||| ||    
T  39488348 catgtcatctgagaaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagagggg 39488249  T
Q  321 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 408  Q
    ||| ||||||| |||||||||||| ||||||||||||   |||| ||||||||||||||||||||||||||   ||||||||||||||    
T  39488248 agactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgttggaagaatta 39488161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 39601994 - 39602075
Alignment:
Q  310 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattag 391  Q
    |||||||||  ||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||||    
T  39601994 tagaagagaatagattgcagtccataaagatagatattcaggagtgccgcaaagagcttgaaaataagaaaaaggaaattag 39602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 39151897 - 39151999
Alignment:
Q  306 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaa 405  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||  ||| | |||| |||||||||||||||||||||||||    |||||||||||    
T  39151897 caagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataagaaaaaggaaattacctgtgttggaagaa 39151996  T
Q  406 tta 408  Q
    |||    
T  39151997 tta 39151999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 39123536 - 39123622
Alignment:
Q  321 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatt 407  Q
    |||||||| |||||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||  |||||| |||||||    
T  39123536 agattgcactccatacagagagatattgaggggtgctccaaagatcttgaaaatatgaaaaaggaaatgagttatgttgaaagaatt 39123622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 44623617 - 44623687
Alignment:
Q  305 acaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaata 375  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||| || |||||||    
T  44623617 acaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 44623687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 39214925 - 39214997
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||||||  |||| ||||||||||||||    
T  39214925 aagtagaggagaagagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaa 39214997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 39450499 - 39450575
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaag 383  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||| |||||| |||| ||| ||||||||||||||    
T  39450499 aagtagaagaaaagagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaag 39450575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39488469 - 39488406
Alignment:
Q  1 acttaaattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga 64  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||    
T  39488469 acttaaattttaaatggctcgcatcatttgataaaaaaacatcgcattcagcttctcgtgaaga 39488406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 27155095 - 27154981
Alignment:
Q  267 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 366  Q
    ||||||||||||| |||||| ||  ||| ||  || | ||||| |||||||   ||||||||||||||||||||||||||||||||||||| | |||| |    
T  27155095 ttggtagaaaaattatttgaagaattcaaaaagaaaagacaagaagaagaggaaagattgcagtccataaagagagatattgaggagtgctccaaagagc 27154996  T
Q  367 ttgaaaataagaaaa 381  Q
    ||| ||||| |||||    
T  27154995 ttggaaatatgaaaa 27154981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 39382282 - 39382213
Alignment:
Q  310 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    ||||||||| |||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39382282 tagaagagaagagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 39495611 - 39495534
Alignment:
Q  311 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaat 388  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||| | |||| |||| |||||  |||||||||||    
T  39495611 agaagaggagagattgcagtccataaagagagatattgaggagcgctccaaagagcttggaaatataaaaaaggaaat 39495534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 39199554 - 39199482
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    |||| |||||||  ||||||||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39199554 aagttgaagagaaaagattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39199482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 39399085 - 39399013
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||  |||| |||| ||| |||||    
T  39399085 aagtagaagagaagagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaa 39399013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 39220162 - 39220233
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataaga 378  Q
    |||| |||||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||| |||||    
T  39220162 aagttgaagagagaagattacagtccataaagagagaaactgaagagtgctgcaaagatcttcaaattaaga 39220233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 39391725 - 39391666
Alignment:
Q  320 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  39391725 gagattgctgtccataaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 39391666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 39479224 - 39479182
Alignment:
Q  313 aagagaggagattgcagtccataaagagagatattgaggagtg 355  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  39479224 aagagaagagattgcagtccataaagagagatattgaagagtg 39479182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 39877692 - 39877634
Alignment:
Q  6 aattttaaatggcttgcatcattcgataaaaatacatcgcaatcggcttctcgtgaaga 64  Q
    ||||||||||||||  |||||||||||||||| |||||||| || | ||||||||||||    
T  39877692 aattttaaatggctcacatcattcgataaaaaaacatcgcattcagattctcgtgaaga 39877634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 44614473 - 44614543
Alignment:
Q  307 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 377  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  44614473 aagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 44614543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 39457788 - 39457828
Alignment:
Q  6 aattttaaatggcttgcatcattcgataaaaatacatcgca 46  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  39457788 aattttaaatggcttgcatcatttgataaaaaaacatcgca 39457828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 39161102 - 39161162
Alignment:
Q  319 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39161102 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39161162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 39208092 - 39208032
Alignment:
Q  319 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39208092 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39208032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 44951455 - 44951384
Alignment:
Q  306 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 377  Q
    |||||||||||||||  ||||| | | ||||||||||||||| || ||||||||||||| ||||||||||||    
T  44951455 caagtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataag 44951384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 32984770 - 32984806
Alignment:
Q  100 agaagagggatacaactacactgtcagttaagagggt 136  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32984770 agaagagggatactactacactgtcagttaagagggt 32984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 33559636 - 33559695
Alignment:
Q  320 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 379  Q
    ||||||||||||  |||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  33559636 gagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 33559695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 16112428 - 16112466
Alignment:
Q  311 agaagagaggagattgcagtccataaagagagatattga 349  Q
    |||||||| || |||||||||||||||||||||||||||    
T  16112428 agaagagaagaaattgcagtccataaagagagatattga 16112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University