View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_13 (Length: 398)
Name: NF15896_high_13
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 30194856 - 30194479
Alignment:
| Q |
1 |
aacccaagaaatatgcaggggcaataacagttttcgagacttcttgaaaattaacccaagaaaatgtatgaggtaaattgtgtgttaatgtattaatttt |
100 |
Q |
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| T |
30194856 |
aacccaagaaatatgcaggggcaataacagttttcgagacttcttgaaaattatcccaagaaaatgtatgaggtaaattgtgtgttaatgtattaatttt |
30194757 |
T |
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| Q |
101 |
cgaaacgataatatatatatcagttttcgtatattatggatgaaacatcattatgatgaagaattatgtttacaaacttatttaagcattattactatga |
200 |
Q |
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| T |
30194756 |
cgaaacgataatatatat--cagttttcgtatattatggatgaaacatcattatgatgaagaattatgtttacaaacttatttaagcattattactatga |
30194659 |
T |
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| Q |
201 |
tagtttttatgagttatggatggaaaccatccatattcttatgttttctacgtcgctccgtccaattaagtacaattacccatttcatccctgaagttcc |
300 |
Q |
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| T |
30194658 |
tagtttttatgagttatggatggaaaccatccatattcttatgttttctatgtcgctccgtccaattaagtacaattacccatttcatccctgaagttcc |
30194559 |
T |
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| Q |
301 |
ttgtctattttaatacttcaaacaatttgtctaaccttatatttctagccactatcttcacctctaggttcttcggtcgt |
380 |
Q |
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| T |
30194558 |
ttgtctattttaatacttcaaacaatttgtctaaccttatatttctagccactatcttcacgtctaggttcttcggtcgt |
30194479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 17909728 - 17909811
Alignment:
| Q |
132 |
tattatggatgaaacatcattatgatgaagaattatgtttacaaacttatttaagcattattactatgatagtttttatgagtt |
215 |
Q |
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| T |
17909728 |
tattatgaatggaaaatcattatgttgaaaaattaggtttaaaaacttgtttaagcattattactatgatggtttttatgagtt |
17909811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 1109610 - 1109564
Alignment:
| Q |
169 |
tttacaaacttatttaagcattattactatgatagtttttatgagtt |
215 |
Q |
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| T |
1109610 |
tttacaaacttatttaagcattattactatgaaaggttttatgagtt |
1109564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 13389350 - 13389292
Alignment:
| Q |
157 |
tgaagaattatgtttacaaacttatttaagcattattactatgatagtttttatgagtt |
215 |
Q |
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| T |
13389350 |
tgaagagttatgtttaaaaacttatttaaggattattactatgttggtttttatgagtt |
13389292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 43931435 - 43931487
Alignment:
| Q |
165 |
tatgtttacaaacttatttaagcattattactatgatagtttttatgagttat |
217 |
Q |
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| T |
43931435 |
tatgtttacaaacttattgaagcattatttctatgattgcgtttatgagttat |
43931487 |
T |
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