View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_high_14 (Length: 365)

Name: NF15896_high_14
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_high_14
NF15896_high_14
[»] chr8 (3 HSPs)
chr8 (18-343)||(24940957-24941282)
chr8 (18-343)||(25169393-25169718)
chr8 (139-331)||(38807610-38807799)
[»] scaffold0171 (3 HSPs)
scaffold0171 (23-331)||(11969-12274)
scaffold0171 (23-331)||(19755-20060)
scaffold0171 (23-287)||(25648-25909)
[»] scaffold0181 (1 HSPs)
scaffold0181 (23-343)||(9573-9890)
[»] chr7 (1 HSPs)
chr7 (31-137)||(36735471-36735580)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 24941282 - 24940957
Alignment:
Q  18 aggagcacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga 117  Q
    |||| |||| |||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941282 aggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga 24941183  T
Q  118 atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941182 atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtc 24941083  T
Q  218 ccctcacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataa 317  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941082 ccctcgcatcgaacttattatcttcctcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataa 24940983  T
Q  318 gttaacaaataaaacggtctttgctg 343  Q
    ||||||||||||||||||||||||||    
T  24940982 gttaacaaataaaacggtctttgctg 24940957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 25169718 - 25169393
Alignment:
Q  18 aggagcacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga 117  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25169718 aggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattaccatcaacattccattcaaaacactga 25169619  T
Q  118 atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtc 217  Q
    |||||||||||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  25169618 atcattgcagcaagatttgtgggaacaacttgaagtgctaataagtaaccagggcaagcccttctaccagttccaaatggcataagttggaaattttgcc 25169519  T
Q  218 ccctcacatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataa 317  Q
    |||||| ||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||  || ||||| || ||||| ||||||||    
T  25169518 ccctcatatcgaacttgttattttcttcacacataaacctctctggcctgaactcaagtgggttttcccacaatttggggtctctacccattgaccataa 25169419  T
Q  318 gttaacaaataaaacggtctttgctg 343  Q
    ||||||||||||||||||||||||||    
T  25169418 gttaacaaataaaacggtctttgctg 25169393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 331
Target Start/End: Original strand, 38807610 - 38807799
Alignment:
Q  139 ggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctcacatcaaacttattat 238  Q
    |||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||| |||| |||||||||||||||||||||||| ||||||||      
T  38807610 ggaacaacttgaagtgctaatgagacaccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttatt-- 38807707  T
Q  239 cttcttcactcat-aaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagttaacaaataaaa 331  Q
       |||||||||| ||||||||| ||||| ||||||||||| || |||||||| || | ||||||  |||| |  || || |||||||||||||    
T  38807708 -cacttcactcataaaacctctc-ggcctaaactcaagtggattctcccacagttttgagtccctatccattgttcacaaattaacaaataaaa 38807799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 12274 - 11969
Alignment:
Q  23 cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat 122  Q
    |||| ||||||||||||||||||||||||||    |  ||||||||||||||||||||| | |||| |||| |||| |||||||||||||||||||||||    
T  12274 cacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccaccaactttccattcaaaacactgaatcat 12175  T
Q  123 tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctc 222  Q
    ||||||||||||||| |||||| ||||||||||||| | |||||| |||||| ||| ||| ||| |||| ||||||||||||||||||||||||||||||    
T  12174 tgcagcaagatttgttggaacagcttgaagtgctaatgaggcaccggggcaaccccgtcttccagttccgaatggcataagttggaaattttgtcccctc 12075  T
Q  223 acatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagttaa 322  Q
    ||||||||||||||    |||||||||||||||||||| ||  | ||||||  ||| || |||||||  || |||||||| ||||| ||||| || ||||    
T  12074 acatcaaacttatt---ctcttcactcataaacctctccggtttaaactcatatggattctcccacaattttgggtcccttcccattgaccacaaattaa 11978  T
Q  323 caaataaaa 331  Q
    |||||||||    
T  11977 caaataaaa 11969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 20060 - 19755
Alignment:
Q  23 cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat 122  Q
    |||| |||||||||||||||||||||||| ||   |||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  20060 cacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccaccaaccttccattcaaaacactgaatcat 19961  T
Q  123 tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctc 222  Q
    ||| ||||||||||| |||||| | ||||||||||| |  ||||||||||||| ||| || ||| ||||||||||||||| |||||||||||||||||||    
T  19960 tgcggcaagatttgtcggaacagcctgaagtgctaatgaagcaccagggcaagacctccttccagttccaaatggcataaattggaaattttgtcccctc 19861  T
Q  223 acatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagttaa 322  Q
    ||||||||||||||    |||||||||||||||||||||||  | ||||||  ||| || |||||||  || |||||||| ||||| ||||| || |||     
T  19860 acatcaaacttatt---ctcttcactcataaacctctctggtttaaactcatatggattctcccacaattttgggtcccttcccatggaccacaaattac 19764  T
Q  323 caaataaaa 331  Q
     ||||||||    
T  19763 taaataaaa 19755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 25909 - 25648
Alignment:
Q  23 cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat 122  Q
    |||| |||||||||||||||||||||||||||  ||  | ||||||||||||| ||||| | ||||||||| |||| ||| |||||||||||||||| ||    
T  25909 cacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataat 25810  T
Q  123 tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctc 222  Q
     |||||||||||||| |||||||||||||| || || | || |||||| ||||| ||||| |||  ||||||||| |||| ||||||||||||||||||     
T  25809 agcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtcccctt 25710  T
Q  223 acatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttccca 287  Q
    | ||||||||||||     ||||||||||||||||||||||  | ||||||||||| ||||||||    
T  25709 agatcaaacttatt---cccttcactcataaacctctctggtttaaactcaagtggattttccca 25648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 9573 - 9890
Alignment:
Q  23 cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat 122  Q
    |||| ||||||||||||||||| ||||||||||  || ||||||||||||||||||||| | |||| ||||  ||| ||||| | |||||| ||||||||    
T  9573 cacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccactaaccttccaataaaaacattgaatcat 9672  T
Q  123 tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctc 222  Q
    ||||||||||||||| |||||| ||||||||||||| |  |||||||||||||||||||| ||| ||||||||||||||  ||| ||||| |||||| |     
T  9673 tgcagcaagatttgttggaacagcttgaagtgctaatgaagcaccagggcaagcccttcttccagttccaaatggcatatattgcaaattctgtccctta 9772  T
Q  223 acatcaaacttattatcttcttcactcataaacctctctggcctgaactcaagtgggttttcccacaggttcgggtccctgcccatcgaccataagttaa 322  Q
    | ||||||||||||     ||||||||||||||||||| ||| ||||||| || || ||||||||||| || || ||| | ||||| ||||| || | ||    
T  9773 aaatcaaacttatt---cccttcactcataaacctctccggcttgaactcgagcggattttcccacagtttgggatccttacccattgaccacaaatcaa 9869  T
Q  323 caaataaaacggtctttgctg 343  Q
    |||||||||  ||||||||||    
T  9870 caaataaaattgtctttgctg 9890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 36735580 - 36735471
Alignment:
Q  31 aaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattacca---tcaacattccattcaaaacactgaatcattgcag 127  Q
    |||||||||||||||| |||||||| | | |||||||||||||| |||||  |||||||||||   | ||| |||||||||||||| |||||||| ||||    
T  36735580 aaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcag 36735481  T
Q  128 caagatttgt 137  Q
    ||||||||||    
T  36735480 caagatttgt 36735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University