View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_15 (Length: 364)
Name: NF15896_high_15
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 32831144 - 32830812
Alignment:
| Q |
13 |
taggcacaattggataaactgtgttaccaccaaatatcatgtgtttttctgtttgtgttgcttttccaacaggtaagcttgaagaagcgaaacaagtttt |
112 |
Q |
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| T |
32831144 |
taggcacaattggataaactgtgttatcaccaaatatcatgtgtttttctgtttgtgttgcttttccaacaggtaaacttgaagaagcgaaacaagtttt |
32831045 |
T |
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| Q |
113 |
gattagaacatcgtcgaataaaggtgaagctgaatttagactttcagaaatttcacaagctgctacaatttctagtacttcttctaggcatggacaaggg |
212 |
Q |
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| T |
32831044 |
gattagaacatcgtcgaataaaggtgaagctgaatttagactttcagaaatttcacaagctgctacaaattctagtacttcttctaggcatggacaaggg |
32830945 |
T |
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| Q |
213 |
gtatggaaagaattgctaattacacctacacgtcctgtattaaggattcttatagctgcagttggtattaattttttcatgcaagcttctggaaatgatg |
312 |
Q |
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| T |
32830944 |
gtatggaaagaattgctaattacaccgacacgtcctgtactaaggattcttatagcagcagttggtattaattttttcatgcaagcgtctggaaatgatg |
32830845 |
T |
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| Q |
313 |
ctgttatatattacagtcctgaagtgtttagag |
345 |
Q |
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| T |
32830844 |
ctgttatatattacagtcctgaagtgtttagag |
32830812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 43547086 - 43547138
Alignment:
| Q |
274 |
ttggtattaattttttcatgcaagcttctggaaatgatgctgttatatattac |
326 |
Q |
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| T |
43547086 |
ttgggattaatttcttcatgcaagcatctggaaacgatgccgttatatattac |
43547138 |
T |
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