View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_17 (Length: 338)
Name: NF15896_high_17
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15211749 - 15211642
Alignment:
| Q |
1 |
taaaacgagctcaacaacatagagaatagaacaatttgaatcgatcatgaactgaaaacacctgcagccaatacaattaaaaagatggactttggcagaa |
100 |
Q |
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| T |
15211749 |
taaaacgagctcaacaacatagagaatagaacaatttgaatcgatcatgaactgaaaacacctgcagccaatacaattaaaaagatggactttggcagaa |
15211650 |
T |
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| Q |
101 |
atcctaat |
108 |
Q |
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|||||||| |
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| T |
15211649 |
atcctaat |
15211642 |
T |
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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 25633570 - 25633471
Alignment:
| Q |
12 |
caacaacatagagaatagaacaattt-gaatcgatcatgaactgaaaacacctgcagccaatac-aattaaaaagatggactttggcagaaatcctaata |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||| ||||||||||||| |
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| T |
25633570 |
caacaacatagagaatagaacaattttgaatcgatcatgaactgaaaacatttgcagccagtacaaattcaaaagatggactttggtagaaatcctaata |
25633471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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