View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_25 (Length: 248)
Name: NF15896_high_25
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 6738660 - 6738439
Alignment:
| Q |
10 |
aaatgaacaaatttaggtttttaaactacgcaaagtctttgcacaaaggcggaagaaaacttcagatataacagtttaaatttatggtatgtaaatgacg |
109 |
Q |
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| T |
6738660 |
aaatgaacaaatttaggtttttaaactacgcaaagtctttgcacaaaggcagaagaaaacttcagacataacagtttaaatttatggtatgtaaatgacg |
6738561 |
T |
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| Q |
110 |
caaacaagcactctaaccacacttgaacgttcaaaccaaccaaccaaaacaatggtgacaaaggcattagtcaccactagcatgcatatacatataaaca |
209 |
Q |
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| T |
6738560 |
caaacaagcactttaaccacacttgaacattcaaaccaaccaaccaaaacaatggtgacaaaggcattagtcaccactagcatgcatatacatataaaca |
6738461 |
T |
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| Q |
210 |
acatataattattggtccaacc |
231 |
Q |
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|||||||||||||||||||||| |
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| T |
6738460 |
acatataattattggtccaacc |
6738439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 367622 - 367848
Alignment:
| Q |
10 |
aaatgaacaaatttaggtttttaaactacgcaaagtctttgcacaaaggcggaagaaaacttcagatataaca--gtttaaatttatggtatgtaaatga |
107 |
Q |
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||||||||||| ||||||||||| |||| |||| |||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
367622 |
aaatgaacaaaattaggtttttagactaaacaaaatcttcacacaaaggcagaagaaaacttcagacataacatagtttaaatttatggtatgtaaataa |
367721 |
T |
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| Q |
108 |
cgcaaacaagcactctaaccacacttgaacgttcaaaccaaccaaccaaaacaatggtgacaaaggcatta---gtcaccactagcatgcatatacatat |
204 |
Q |
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| T |
367722 |
agcaagcaagcactccagccacacttgaacattcaaaccaggcaaccaaaacaatggtgacaaaggcattagccgccgccactaaaattcatatacatat |
367821 |
T |
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| Q |
205 |
aaacaacatataattattggtccaacc |
231 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
367822 |
aaacaacatataattattgatccaacc |
367848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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