View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_3 (Length: 638)
Name: NF15896_high_3
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 38368072 - 38368695
Alignment:
| Q |
1 |
cgcggctcacatgatgctcccgggcattggttggttattgctgctaagcttgtgacagagggcggcaaggttggattacaggtcaagtttgcattgttag |
100 |
Q |
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| T |
38368072 |
cgcggcccacatgatgctcccgggcattggttggttattgctgctaagcttgtgacagagggtggcaaggttggattacaggtcaagtttgcattgttag |
38368171 |
T |
|
| Q |
101 |
attactagtgttaggctaactgagaatatatgcagagaaattttgttttgcttgatttt-ttgatgaattacatacaaatcacgtgtacatatataagat |
199 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38368172 |
attactagtgttaggctaactgagactatatgcagagaaattttgttttgcttaatttttttgatgaattacatacaaatcacgtgtacatatataagat |
38368271 |
T |
|
| Q |
200 |
gctattgtacagtacagtatagtataatacagtacacaaaatgagtggtgatgattgcctttgcctaatagaaaaatcaaaatgcggctattctgcattc |
299 |
Q |
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| T |
38368272 |
actattgtacagtacagtatagcataatacagtacacaaaatgagtggtgatgattgcctttgcctaatagaaaaatcaaaatgcgactattctgcattc |
38368371 |
T |
|
| Q |
300 |
tcttctttcaattgagtgcacaaagtgggaaaactaacttctctaacaaacttctaactgaccaacagaaaattaacttcatcagctaaatacaacaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368372 |
tcttctttcaattgagtgcacaaagtgggaaaactaacttctctaacaaacttctaactgaccaacagaaaattaacttcatcagctaaatacaacaaat |
38368471 |
T |
|
| Q |
400 |
aatttaaataattaactactaatctctatactttaacatagctataaattatgttttgatatatcaatagtttagttatagccaatttaatgggtttgtt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368472 |
aatttaaataattaactactaatctctatactttaacatagctataaattatgttttgatatatcaatagtttagttatagccaatttaatgggtttgtt |
38368571 |
T |
|
| Q |
500 |
ttggtgccatatataatgcatcagttaccagttgattgattacaaatgtgattcactcttctgtattaatctagatacatggttttcaattgatttgatg |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38368572 |
ttggtgccatatataatgcatcagttaccagttgattgattacaaatgtgattcactcttctgtattaatttagatacatggttttcaattgatttgatg |
38368671 |
T |
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| Q |
600 |
attgatacatataaaggttctcta |
623 |
Q |
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|||||||||||||||||||||||| |
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| T |
38368672 |
attgatacatataaaggttctcta |
38368695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 34884410 - 34884316
Alignment:
| Q |
10 |
catgatgctcccgggcattggttggttattgctgctaagcttgtgacagagggcggcaaggttggattacaggtcaagtttgcattgttagatta |
104 |
Q |
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||||||||||| || ||||||||||||| |||||||||||||| || ||||| || ||| | ||||| ||||| |||||||||||||| ||||| |
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| T |
34884410 |
catgatgctcctggccattggttggttacagctgctaagcttgtcactgagggtggtaagataggattgcaggtaaagtttgcattgttggatta |
34884316 |
T |
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