View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_31 (Length: 235)
Name: NF15896_high_31
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 8439174 - 8438979
Alignment:
| Q |
17 |
caaaggtccgggtcttctatgaggaaggtatttaatttgatcaatgcaatatcattattttccttttctattattagtgataaaatcaccacttaacaca |
116 |
Q |
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| T |
8439174 |
caaaggtccgggtcttctatgagaaaggtattt-----gatcaatgcaatatcattattttccttttctattattagtgataaaatcaccactgaacaaa |
8439080 |
T |
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| Q |
117 |
tcttttacaattattttaaaatggattgggtcccagctgaaagaagtgaattccttaagcttatttacaatatcattggcttgaaacgattatctaagta |
216 |
Q |
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| T |
8439079 |
tcttttacaattattttaaaatggattgggtcccagctgaaagaagtgaattccttaagcttatttacaatatcattggcttgaaacgattatctaagta |
8438980 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 31947332 - 31947416
Alignment:
| Q |
51 |
atttgatcaatgcaatatcattattttccttttc--tattattagtgataaaatcaccacttaacacatcttttacaattatttt |
133 |
Q |
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| T |
31947332 |
attttatcaatgcaatatcattgttttcctttctattattattagtgacaaaatcaccattgaacatatctttcacaatcatttt |
31947416 |
T |
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