View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_4 (Length: 615)
Name: NF15896_high_4
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 32910240 - 32909655
Alignment:
| Q |
18 |
attctgaaattggtcacaggttaattaaccagcttaattatgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaat |
117 |
Q |
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| T |
32910240 |
attctgaaattggtcacaggttaattaaccagcttaatcatgtgtttgtcataattcacaacccactatgtataactggaaaaggtgaagatcaattaat |
32910141 |
T |
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| Q |
118 |
tatttaaaagacacgattaactggcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcatgggtgct |
217 |
Q |
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| T |
32910140 |
tatttaaaagacacgattaacttgcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcattggtgct |
32910041 |
T |
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| Q |
218 |
ctaattattatactacttagtatcttaatcttgatcgaatcaacacgttgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaattc |
317 |
Q |
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| T |
32910040 |
ctaattattatac----tagtatcttaatcttgatcgaatcaacacattgtttaaatgtggcacaatatatggcaaggacacaaaatattactacaattc |
32909945 |
T |
|
| Q |
318 |
acaat-nnnnnnntcaacacaaaaccaattacaaatgagccatcaacacaaaatatgaataaagcataacgctcaagctatggacctcaaacatatagta |
416 |
Q |
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| T |
32909944 |
acaataaaaaaaatcaacacaaaaccaattacaaatgagccatcaacacaaaaaatgaataaagcataacgctcaagctatggacctcaaacatatagta |
32909845 |
T |
|
| Q |
417 |
agatgtgtccgcgatttatgtaacttaactttgaatagattctaaagattaccatgagccatcaccatgacataaatttaatatactctaaaaattaccc |
516 |
Q |
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| T |
32909844 |
agatgtgtccgcgatttatgtaacttaactttgaatagattctaaagattaccatgagccatcaccatgacataaatttaatatattctaaaaattaccc |
32909745 |
T |
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| Q |
517 |
------atgagaagctctttttgttaaaagatattgatattttgagctttt-tagatcatacacagacaactaaattgcacgcaacattt |
599 |
Q |
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| T |
32909744 |
atgactatgagaagctctttttgttaaaagatattgatattttgagcttttcaagatcatacacggacatctaaattgcacgcaacattt |
32909655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 32932086 - 32931978
Alignment:
| Q |
57 |
atgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctt |
156 |
Q |
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||||||| || || |||||||| ||||||||||||| |||||||||||||||| || |||| |||||| | || ||||| || | |||||||||||||| |
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| T |
32932086 |
atgtgttggttatgattcacaatccactatgtataaatggaaaaagtgaagatgaaataataatttaagaaacgtgattatctcgtgttttctttctctt |
32931987 |
T |
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| Q |
157 |
aaattatgt |
165 |
Q |
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||||||||| |
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| T |
32931986 |
aaattatgt |
32931978 |
T |
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