View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_high_5 (Length: 532)
Name: NF15896_high_5
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 53618009 - 53618507
Alignment:
| Q |
16 |
aatatgtaagtagagtttct---atactaggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaagtattatt |
112 |
Q |
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| T |
53618009 |
aatatgtaagtagagtttcttctatactaggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaaatattatt |
53618108 |
T |
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| Q |
113 |
tttgtattggagtaaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatc |
212 |
Q |
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| T |
53618109 |
tttgtattggagtaaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatc |
53618208 |
T |
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| Q |
213 |
tacttgctccggagatactctaatgagtccacactcagctattgtcatcttcattttacattaacttttactgttaatggattttatacatacaagttac |
312 |
Q |
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| T |
53618209 |
tacttgctccggagatactctaatgagtccacactcagctattgtcatcttcattttacattaacttttactgttgatggattttatacatacaagttac |
53618308 |
T |
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| Q |
313 |
ttgaacagagttactggtttgtccgtttgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttact |
412 |
Q |
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| T |
53618309 |
ttgaacagagttactggtttgtccgtttgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttact |
53618408 |
T |
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| Q |
413 |
agttaataattttgttgcagaatggaataatgcaaactcacgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctc |
511 |
Q |
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| T |
53618409 |
agttaataattttgttgcagaatggaataatgcaaactcatgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctc |
53618507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 14344716 - 14344796
Alignment:
| Q |
125 |
taaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttc |
205 |
Q |
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|||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
14344716 |
taaaaataggtgaatgttcttaaataacacatggaaacttggggcccactaaaagtaactcaagaacataaagcattgttc |
14344796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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