View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_high_9 (Length: 479)

Name: NF15896_high_9
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_high_9
NF15896_high_9
[»] chr8 (5 HSPs)
chr8 (137-416)||(13855562-13855841)
chr8 (5-125)||(13855171-13855291)
chr8 (414-465)||(13855866-13855917)
chr8 (165-292)||(15623244-15623371)
chr8 (165-292)||(15647033-15647160)
[»] chr6 (11 HSPs)
chr6 (137-412)||(30635040-30635312)
chr6 (5-125)||(30635582-30635702)
chr6 (174-298)||(6945241-6945365)
chr6 (73-125)||(7898041-7898093)
chr6 (199-286)||(30456198-30456285)
chr6 (73-119)||(6945680-6945726)
chr6 (165-235)||(17778621-17778691)
chr6 (199-286)||(21218546-21218633)
chr6 (231-286)||(29127776-29127831)
chr6 (261-299)||(20990830-20990868)
chr6 (244-312)||(30896442-30896510)
[»] chr7 (2 HSPs)
chr7 (125-292)||(26490663-26490830)
chr7 (5-122)||(26490270-26490384)
[»] chr4 (2 HSPs)
chr4 (48-125)||(16663222-16663299)
chr4 (228-305)||(655352-655429)
[»] chr3 (2 HSPs)
chr3 (165-298)||(5746028-5746161)
chr3 (165-298)||(5782987-5783120)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 137 - 416
Target Start/End: Original strand, 13855562 - 13855841
Alignment:
Q  137 ggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855562 ggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagt 13855661  T
Q  237 ttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaaccctcgtttttgccttggtgggtgattcgcggctgtggttttggtccgga 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13855662 ttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaatcctcatttttgccttggtgggtgattcgcggctgtggttttggtccgga 13855761  T
Q  337 cagaactgtataggttctgctgtattttctagttttttggttttgctgggtgctgatagcagcagttcctgcggcagttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855762 cagaactgtataggttctgctgtattttctagttttttggttttgctgggtgctgatagcagcagttcctgcggcagttt 13855841  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 13855171 - 13855291
Alignment:
Q  5 tacttcgaaatttgaggcttttagaagatcagttgagctatgaggaggaagttattttccgggagttgtggaagagtaaggcgccggcaaaggtgttggc 104  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  13855171 tacttcaaaatttgaggcttttagaagatcggttgagctatgaggaggaagttattttccgtgagttatggaagagtaaggcgccggcaaaggtattggc 13855270  T
Q  105 tttttcgtggactttatttct 125  Q
    |||||||||||||||||||||    
T  13855271 tttttcgtggactttatttct 13855291  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 13855866 - 13855917
Alignment:
Q  414 tttcgttccctgtttgtttgttcaggtgcagagcctggctttggttcctttt 465  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13855866 tttcgttccctgtttgtttgttcaggtgcagggcctggctttggttcctttt 13855917  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 15623244 - 15623371
Alignment:
Q  165 atttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtt 264  Q
    ||||||||||| ||||| ||||||||||| |||||||||||| | ||||||||| |   ||| ||||||||| ||  ||| ||||| ||| | ||||||     
T  15623244 atttttaataacaagatcattgaggtggaagaaatggtggataagatcaaagtgctagtgtggcaatggagtatgtgtaggttgaaaattcccacgtgtc 15623343  T
Q  265 tattctatgagtggtgttggaaccctcg 292  Q
    | || |||||||||||||||||||||||    
T  15623344 tgttttatgagtggtgttggaaccctcg 15623371  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 15647033 - 15647160
Alignment:
Q  165 atttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtt 264  Q
    ||||||||||| ||||| ||||||||||| |||||||||||| | ||||||||| |   ||| ||||||||| ||  ||| ||||| ||| | ||||||     
T  15647033 atttttaataacaagatcattgaggtggaagaaatggtggataagatcaaagtgctagtgtggcaatggagtatgtgtaggttgaaaattcccacgtgtc 15647132  T
Q  265 tattctatgagtggtgttggaaccctcg 292  Q
    | || |||||||||||||||||||||||    
T  15647133 tgttttatgagtggtgttggaaccctcg 15647160  T

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Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 137 - 412
Target Start/End: Complemental strand, 30635312 - 30635040
Alignment:
Q  137 ggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagt 236  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||     
T  30635312 ggtggtttggttgtct---aataattgtatttttaataataagattattgaggtggaggatatggtggatcaaatcaaagtgttggcgtggcaatgaagc 30635216  T
Q  237 ttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaaccctcgtttttgccttggtgggtgattcgcggctgtggttttggtccgga 336  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||| || | ||||||||||| ||     
T  30635215 ttggctagattgaacattgcgacgtgtttattctacgagtggtattggaaccctcgtttttgccttgttggttgattcggggttatggttttggtctggg 30635116  T
Q  337 cagaactgtataggttctgctgtattttct--agttttttggttttgctgggtgctgatagcagcagttcctgcggca 412  Q
    || ||||||| ||| | || | ||| ||||   |||||||||||||| |||||| ||||||||  ||||| |||||||    
T  30635115 cataactgtacagggt-tg-tttatgttcttctgttttttggttttgttgggtgttgatagcaatagttcatgcggca 30635040  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 30635702 - 30635582
Alignment:
Q  5 tacttcgaaatttgaggcttttagaagatcagttgagctatgaggaggaagttattttccgggagttgtggaagagtaaggcgccggcaaaggtgttggc 104  Q
    |||||| |||||||||||  |||||||||| ||| ||||||||||||||||||||||| | |||||||||||| |||||||||||  |||||||||||||    
T  30635702 tacttcaaaatttgaggccattagaagatcggtttagctatgaggaggaagttatttttcaggagttgtggaatagtaaggcgccatcaaaggtgttggc 30635603  T
Q  105 tttttcgtggactttatttct 125  Q
    ||||| |||||||||||||||    
T  30635602 tttttagtggactttatttct 30635582  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 6945365 - 6945241
Alignment:
Q  174 aataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtttattctatg 273  Q
    ||||||||||| |||||||| || |||||||||||| | || ||| | ||||| ||||| ||||||  ||| ||||||||||| || ||||| || || |    
T  6945365 aataagattatggaggtggatgagatggtggatcaagttaaggtgctctcgtggcaatgaagtttgagtaggttgaacattgcaacttgtttgttttacg 6945266  T
Q  274 agtggtgttggaaccctcgtttttg 298  Q
    ||||||| ||||||||||| |||||    
T  6945265 agtggtgatggaaccctcgcttttg 6945241  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 7898041 - 7898093
Alignment:
Q  73 tggaagagtaaggcgccggcaaaggtgttggctttttcgtggactttatttct 125  Q
    |||||||||||||  ||||| |||||||||||||||| |||||||||||||||    
T  7898041 tggaagagtaaggtaccggctaaggtgttggcttttttgtggactttatttct 7898093  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 30456198 - 30456285
Alignment:
Q  199 tggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaa 286  Q
    |||||||||||||||||||  |  |||| ||||||||||||| ||||||||| || | ||| |||||||| || || |||||||||||    
T  30456198 tggtggatcaaatcaaagttctagcgtggcaatggagtttggatagattgaagatagagacttgtttattttacgaatggtgttggaa 30456285  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 6945726 - 6945680
Alignment:
Q  73 tggaagagtaaggcgccggcaaaggtgttggctttttcgtggacttt 119  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  6945726 tggaaaagtaaggcaccggctaaggtgttggctttttcgtggacttt 6945680  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 17778621 - 17778691
Alignment:
Q  165 atttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggag 235  Q
    |||||||||||||||||| ||| |||||| ||  ||||||| ||||| ||||||||||| || ||||||||    
T  17778621 atttttaataataagatttttggggtggatgagttggtggaacaaattaaagtgttgtcatggcaatggag 17778691  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 21218546 - 21218633
Alignment:
Q  199 tggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaa 286  Q
    ||||||||||||| ||| ||||||| || |||||| ||||| | |||||||| || | | | ||||| |||||||||||||| |||||    
T  21218546 tggtggatcaaattaaaatgttgtcttggcaatggtgtttgtcgagattgaatatagagtcttgtttgttctatgagtggtgctggaa 21218633  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 29127776 - 29127831
Alignment:
Q  231 tggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaa 286  Q
    ||||||| |||||||||||| |||||||| ||||| ||||| || |||||||||||    
T  29127776 tggagttcggctagattgaaaattgcgacatgtttgttctacgaatggtgttggaa 29127831  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 20990830 - 20990868
Alignment:
Q  261 tgtttattctatgagtggtgttggaaccctcgtttttgc 299  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  20990830 tgtttattctacgagtggtgttggaaccctcgcttttgc 20990868  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 30896510 - 30896442
Alignment:
Q  244 gattgaacattgcgacgtgtttattctatgagtggtgttggaaccctcgtttttgccttggtgggtgat 312  Q
    ||||||| ||||| || ||||| || ||||| ||||| |||||||| || ||||| |||||||||||||    
T  30896510 gattgaagattgcaacatgtttgttttatgaatggtgctggaacccgcgcttttgtcttggtgggtgat 30896442  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 125 - 292
Target Start/End: Original strand, 26490663 - 26490830
Alignment:
Q  125 tgcggtggtttgggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcg 224  Q
    ||||||| ||||||||||||||  || ||||||||||||||||||||| ||||||  | ||||||||||||| |||||||| |||||||||||| ||||     
T  26490663 tgcggtgatttgggtggtttggaggtgtcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtca 26490762  T
Q  225 tgacaatggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaaccctcg 292  Q
    || |||||||| |||||||||||| | ||||| || |||||||| || ||| ||||||||||||||||    
T  26490763 tggcaatggagcttggctagattgcatattgcaacttgtttattttacgagcggtgttggaaccctcg 26490830  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 26490270 - 26490384
Alignment:
Q  5 tacttcgaaatttgaggcttttagaagatcagttgagctatgaggaggaagttattttccgggagttgtggaagagtaaggcgccggcaaaggtgttggc 104  Q
    |||||| ||||||||||| |||| ||   | ||||||||| |||||||||  |||||||||||| |||||||||||||||||||  || ||||| ||||     
T  26490270 tacttcaaaatttgaggcctttanaa---cggttgagctaagaggaggaaaatattttccgggaattgtggaagagtaaggcgctagctaaggttttggt 26490366  T
Q  105 tttttcgtggactttatt 122  Q
    ||||||||||||||||||    
T  26490367 tttttcgtggactttatt 26490384  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 16663299 - 16663222
Alignment:
Q  48 ggaggaagttattttccgggagttgtggaagagtaaggcgccggcaaaggtgttggctttttcgtggactttatttct 125  Q
    |||||||||||||||||||||  | ||||||||||| || ||||| |||||| | |||||||||||||||||| ||||    
T  16663299 ggaggaagttattttccgggaaatttggaagagtaaagctccggctaaggtggtagctttttcgtggactttacttct 16663222  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 655352 - 655429
Alignment:
Q  228 caatggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaaccctcgtttttgccttggt 305  Q
    ||||||||| ||  ||||||||| |||||||||||||| |  |||||| | ||||||||||||| | |||| ||||||    
T  655352 caatggagtatgagtagattgaaaattgcgacgtgtttgtattatgagagatgttggaaccctcctgtttgtcttggt 655429  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 5746028 - 5746161
Alignment:
Q  165 atttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtt 264  Q
    ||||| |||||||||| | ||||| |   |||| |||||||| | || ||||||||||| || || ||| ||||| | |||||||| || | ||| ||||    
T  5746028 attttcaataataagacttttgagattttggaattggtggataacataaaagtgttgtcttggcagtggtgtttgtcgagattgaatatagagacttgtt 5746127  T
Q  265 tattctatgagtggtgttggaaccctcgtttttg 298  Q
    | || ||||| ||||||||||||||||| |||||    
T  5746128 tgttttatgaatggtgttggaaccctcggttttg 5746161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 5782987 - 5783120
Alignment:
Q  165 atttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagtttggctagattgaacattgcgacgtgtt 264  Q
    ||||| |||||||||| | ||||| |   |||| |||||||| | || ||||||||||| || || ||| ||||| | |||||||| || | ||| ||||    
T  5782987 attttcaataataagacttttgagattttggaattggtggataacataaaagtgttgtcttggcagtggtgtttgtcgagattgaatatagagacttgtt 5783086  T
Q  265 tattctatgagtggtgttggaaccctcgtttttg 298  Q
    | || ||||| ||||||||||||||||| |||||    
T  5783087 tgttttatgaatggtgttggaaccctcggttttg 5783120  T

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