View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_10 (Length: 457)
Name: NF15896_low_10
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 38367945 - 38367504
Alignment:
| Q |
1 |
ctgtgtagcagtaacactttgttgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattct |
100 |
Q |
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| T |
38367945 |
ctgtgtagcagtaacactttgttgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattct |
38367846 |
T |
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| Q |
101 |
gttttcctgatgctgcaatttggtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggtta |
200 |
Q |
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| T |
38367845 |
gttttcctgatgctgcaatttggtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggtta |
38367746 |
T |
|
| Q |
201 |
cgatataaaccccgcttgaatttgattcgtgcaaccagttggggtcatacttgaccactgaggtgcacacatgcgcgaatttcttccatcttattggttc |
300 |
Q |
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| T |
38367745 |
cgatataaaccccgcttgaatttgattcgtgcaaccagttggggtcatacttgaccactgaggtgcacacatgcgcgaatttcttccatcttattggttc |
38367646 |
T |
|
| Q |
301 |
ggcaaactggttgctggattcgtcctcatcggatcctcgccacatagttgtggtgcttgaagagagtgtcattgtatttgggaggcttgaaagatgatgt |
400 |
Q |
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| T |
38367645 |
ggcaaactggttgctggattcgtcctcatcggatcctcgccacatagtcgtggtgcttgaagagagtgtcattgtatttgggaggcttgaaagatgatgt |
38367546 |
T |
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| Q |
401 |
atatgaattgcaagtttatcacatttccttccctccaagtat |
442 |
Q |
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| T |
38367545 |
atatgaattgcaagtttatcacatttccttccctccaagtat |
38367504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 34884550 - 34884737
Alignment:
| Q |
23 |
tgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattctgttttcctgatgctgcaatttg |
122 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| || |||| || | |||| || | ||||| | |
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| T |
34884550 |
tgtgtgaatgaaaatgttgtgctcaaatttgtgaagaaagatgattttcttgaggcctctggtgcggcgccccactccgacttccgtatagtacaattag |
34884649 |
T |
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| Q |
123 |
gtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggttacgatataaac |
210 |
Q |
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||||||||| |||||||| ||||| ||||| ||||| || |||||| ||||| || | |||||||| ||||| ||||| || ||||| |
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| T |
34884650 |
ttatgtgagtaaagagaagacgcagatgaagcacatttcttggccaactccctctgataatgagttgtgcaccagttacaatgtaaac |
34884737 |
T |
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