View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_15 (Length: 366)
Name: NF15896_low_15
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 45648039 - 45647691
Alignment:
| Q |
18 |
ctatgaaagcagaacatgaagctggctttaggcatctttcttctgtgcctgttaccaatggacatcttcaatcaagatctccgtttccttcttacaacga |
117 |
Q |
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| T |
45648039 |
ctatgaaagcagaacatgaagctggctttaggcatctttcttctgtgcctgttaccaatggacatcttcaatcaagatctccgtttccttcttacaacga |
45647940 |
T |
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| Q |
118 |
aaaacaatttccatttcttcatgaaaatgttgccacatccactacaggcagtaagttcagtgaaaacaatagccattatgtgcatgccattggctacgcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45647939 |
aaaacaatttccatttcttcatgaaaatgttgccacatccactacaggcagtaagttcagtgaaaacaatagccattacgcgcatgccattggctacgcc |
45647840 |
T |
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| Q |
218 |
tcattaggaagtgaagacttcaatgtttttcacaccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctcttctgtcatctc |
317 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45647839 |
tcattaggaaatgaagacttcaatgtttttcataccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctcttctgtcatctc |
45647740 |
T |
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| Q |
318 |
aatccaataacacttcaagccagtcctcggaaattccctttgataaccc |
366 |
Q |
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| T |
45647739 |
aatccaataacacttcaagccagtcctcggaaattccctttgataaccc |
45647691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 45641578 - 45641220
Alignment:
| Q |
18 |
ctatgaaagcagaacatgaagctggctttaggcatctttcttc----------tgtgcctgttaccaatggacatcttcaatcaagatctccgtttcctt |
107 |
Q |
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| T |
45641578 |
ctatgaaagcagaacataaagctggctttaggcatctatcttcagtctttttttgtgcctgttactaatggatattcttaaccaagatcttcgtttcctt |
45641479 |
T |
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| Q |
108 |
cttacaacgaaaaacaatttccatttcttcatgaaaatgttgccacatccactacaggcagtaagttcagtgaaaacaatagccattatgtgcatgccat |
207 |
Q |
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| T |
45641478 |
c----aatgaaaaacaatttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttagtgagaacaatagctagtatgcaaacgccgt |
45641383 |
T |
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| Q |
208 |
tggctacgcctcattaggaagtgaagacttcaatgtttttcacaccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctc---- |
303 |
Q |
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| T |
45641382 |
t-gtgacacattagtaggaagtgcatacttcaatgcttttcatacatcatcaaccgtttaaggattatcaggaatttcagactcttgcgccctctctcgt |
45641284 |
T |
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| Q |
304 |
-tcttctgtcatctcaatccaataacacttcaagccagtcctcggaaattccctttgataaccc |
366 |
Q |
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|| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||| ||||| |
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| T |
45641283 |
gtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaattccccttgaaaaccc |
45641220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 25610293 - 25610438
Alignment:
| Q |
44 |
tttaggcatctttcttctgtgcctgttaccaatggacatcttcaatcaagatctccgtttccttcttacaacgaaaaacaatttccatttcttcatgaaa |
143 |
Q |
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||||||| |||||||||| | || |||| |||| ||||| ||| |||||| ||| ||||||||| |||||| | ||||||||||| |||||||| |||| |
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| T |
25610293 |
tttaggcctctttcttctattccaattacaaatgcacatcctcagtcaagaactctgtttccttcatacaacaataaacaatttccttttcttcaagaaa |
25610392 |
T |
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| Q |
144 |
atgttgccacatccactacaggcagtaagttcagtgaaaacaatag |
189 |
Q |
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| T |
25610393 |
acggtgctacatctgctacaggaagcatcttctgtgaaaacaatag |
25610438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 25610577 - 25610624
Alignment:
| Q |
292 |
ttgtgctctctctcttctgtcatctcaatccaataacacttcaagcca |
339 |
Q |
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|||||||||||||||||||||||| |||||| | ||| |||||||||| |
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| T |
25610577 |
ttgtgctctctctcttctgtcatcccaatcccaaaactcttcaagcca |
25610624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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