View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_2 (Length: 706)
Name: NF15896_low_2
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 121 - 372
Target Start/End: Original strand, 27206903 - 27207155
Alignment:
| Q |
121 |
tatgctatttattcattaagaaaaagaaaatcctgtgataattttgagaatcattgagcaaatggagaggaatcgtagttataaaacagt-ctttactga |
219 |
Q |
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| T |
27206903 |
tatgctatttattcattaagaaaaagaaaatcccgtgataattttgagaatcattgagcaaatggagagaaatcgtagttataaaacagttctttactga |
27207002 |
T |
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| Q |
220 |
tctgaaacttggtgcattgatttgttagacaaaactttttatgcggtagtgtatacttcaaaatgttccttagaaagaccatataaaataaataaaatga |
319 |
Q |
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| T |
27207003 |
tctgaaacttggtgcattgatttgttagacaaaactttttatgcggtagtgtatacttcaaaatgttccttagaaagaccatataaaataaataaaatga |
27207102 |
T |
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| Q |
320 |
tataatcttttgcagctcataacttcaagagaagaaaccgattatcaaggatt |
372 |
Q |
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| T |
27207103 |
tataatcttttgcagctcataacttcaagagaagaaaccaattatcaaggatt |
27207155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 526 - 685
Target Start/End: Original strand, 27207284 - 27207443
Alignment:
| Q |
526 |
cacattgcacatatgcacttattttagacaaagacataagttaaataatttaaaatggtatatttgtttggtcgaggagttcaagctgatgggcagaagg |
625 |
Q |
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| T |
27207284 |
cacattgcacatgtgcacttattttagacaaagacataagttaaataatttaaaatggtatatttgtttggtcgaggagttcaagctgatgggcagaagg |
27207383 |
T |
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| Q |
626 |
tgattgcatagtcgggacttgcaaagcaagtggaaatgctgctcttgtcgtcgtaagcat |
685 |
Q |
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| T |
27207384 |
tgattgcatagtcgggtcttgcaaagcaagtgaaaatgctgctcttatcgtcgtaagcat |
27207443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27206634 - 27206755
Alignment:
| Q |
1 |
aaataagctatttaccaaatgcttgattggagatctcatgttgaccagtgatatggtggccataaatgaaggcaatcttctcgcgttacaatctgcaaat |
100 |
Q |
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| T |
27206634 |
aaataagctatttaccaaatgcttgattggagatctcatgttgaccagtgatatggtggccataaatgaaggcaatcttctcgcgttacaatctgcgaat |
27206733 |
T |
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| Q |
101 |
cacaacaattttatatgaccta |
122 |
Q |
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| T |
27206734 |
cacaacaattttatatgaccta |
27206755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 543 - 685
Target Start/End: Original strand, 27214672 - 27214814
Alignment:
| Q |
543 |
cttattttagacaaagacataagttaaataatttaaaatggtatatttgtttggtcgaggagttcaagctgatgggcagaaggtgattgcatagtcggga |
642 |
Q |
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| T |
27214672 |
cttattttatataaagacataagttcaatgatttaaaatggcatatttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggt |
27214771 |
T |
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| Q |
643 |
cttgcaaagcaagtggaaatgctgctcttgtcgtcgtaagcat |
685 |
Q |
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| T |
27214772 |
cttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcat |
27214814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 543 - 685
Target Start/End: Original strand, 27220634 - 27220776
Alignment:
| Q |
543 |
cttattttagacaaagacataagttaaataatttaaaatggtatatttgtttggtcgaggagttcaagctgatgggcagaaggtgattgcatagtcggga |
642 |
Q |
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| T |
27220634 |
cttattttatataaagacataagttcaataatttaaaatggcatatttgtttggtcatggagttcaagctgatggacagaaggtgatggcgtagtcgggt |
27220733 |
T |
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| Q |
643 |
cttgcaaagcaagtggaaatgctgctcttgtcgtcgtaagcat |
685 |
Q |
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| T |
27220734 |
cttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcat |
27220776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 95 - 355
Target Start/End: Original strand, 27214282 - 27214538
Alignment:
| Q |
95 |
gcaaatcacaacaattttatatgacctatgctatttattcattaagaaaaagaaaatcctgtgataattttgagaatcattgagcaaatggagaggaatc |
194 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||||||||| ||||| ||| || |||||||||||| |||||| ||||||||||||| ||||| |
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| T |
27214282 |
gcaaattacaacaattttatatgacttatgatattgattcattaaggaaaag-aaaccccatgataattttgaaaatcatcgagcaaatggaga-gaatc |
27214379 |
T |
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| Q |
195 |
gtagttataaaacag---tctttactgatctgaaacttggtgcattgatttgttagacaaaactttttatgcggtagtgtatacttcaaaatgttcctta |
291 |
Q |
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| T |
27214380 |
gttgttataaaacagaattcttttcagatctcaaacttaatgcatttatttgttagacaaaacatttaatgtagatggttatattttaaaatgttcgctg |
27214479 |
T |
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| Q |
292 |
gaaagaccatataaaataaataaaatgatataatcttttgcagctcataacttcaagagaagaa |
355 |
Q |
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|||| |||| ||||||||||||||| |||| ||||||||||||||| | |||||||||| |
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| T |
27214480 |
aaaaggccat-----ataaataaaatgataaaatcatttgcagctcataacataaagagaagaa |
27214538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 588 - 685
Target Start/End: Complemental strand, 27444184 - 27444087
Alignment:
| Q |
588 |
tttgtttggtcgaggagttcaagctgatgggcagaaggtgattgcatagtcgggacttgcaaagcaagtggaaatgctgctcttgtcgtcgtaagcat |
685 |
Q |
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| T |
27444184 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcat |
27444087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 612 - 685
Target Start/End: Original strand, 27432450 - 27432523
Alignment:
| Q |
612 |
tgatgggcagaaggtgattgcatagtcgggacttgcaaagcaagtggaaatgctgctcttgtcgtcgtaagcat |
685 |
Q |
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| T |
27432450 |
tgatgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcat |
27432523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 27207229 - 27207267
Alignment:
| Q |
448 |
atgtttgatttatattttgggttcatactataccacgtt |
486 |
Q |
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| T |
27207229 |
atgtttgatttatatttgtggttcatactataccacgtt |
27207267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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