View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_low_24 (Length: 253)

Name: NF15896_low_24
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_low_24
NF15896_low_24
[»] chr4 (5 HSPs)
chr4 (16-252)||(41943014-41943250)
chr4 (62-178)||(3295290-3295407)
chr4 (113-252)||(10344738-10344885)
chr4 (74-175)||(31519152-31519254)
chr4 (16-113)||(10336080-10336177)
[»] chr8 (6 HSPs)
chr8 (16-182)||(9818174-9818340)
chr8 (16-178)||(21231845-21232007)
chr8 (16-173)||(42077468-42077625)
chr8 (62-176)||(9881085-9881200)
chr8 (194-252)||(42077624-42077682)
chr8 (77-177)||(24423220-24423320)
[»] chr7 (8 HSPs)
chr7 (16-182)||(10530137-10530303)
chr7 (16-180)||(9745118-9745282)
chr7 (16-178)||(29587570-29587734)
chr7 (62-176)||(13167881-13167996)
chr7 (16-173)||(8311731-8311891)
chr7 (71-162)||(46002795-46002887)
chr7 (77-171)||(31211093-31211188)
chr7 (16-53)||(10529527-10529564)
[»] chr1 (3 HSPs)
chr1 (16-171)||(31654571-31654726)
chr1 (16-176)||(13380218-13380378)
chr1 (16-144)||(51443522-51443650)
[»] chr2 (7 HSPs)
chr2 (16-192)||(27977147-27977323)
chr2 (16-192)||(28063675-28063851)
chr2 (16-161)||(29046559-29046702)
chr2 (16-175)||(16131078-16131237)
chr2 (62-176)||(28497235-28497349)
chr2 (103-174)||(22403747-22403819)
chr2 (19-95)||(22403839-22403915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (16-167)||(107863-108014)
[»] chr3 (6 HSPs)
chr3 (19-232)||(15990169-15990391)
chr3 (16-177)||(40888687-40888848)
chr3 (74-176)||(52641386-52641489)
chr3 (16-175)||(29453643-29453806)
chr3 (73-170)||(19544714-19544811)
chr3 (86-182)||(11650592-11650689)
[»] scaffold0022 (1 HSPs)
scaffold0022 (16-174)||(2023-2181)
[»] scaffold0259 (1 HSPs)
scaffold0259 (62-182)||(2545-2666)
[»] scaffold0028 (1 HSPs)
scaffold0028 (16-53)||(148393-148430)
[»] chr5 (1 HSPs)
chr5 (103-172)||(18927185-18927255)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 41943014 - 41943250
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  41943014 aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa 41943113  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctctccttcctagccgaataacctctaaatttata 215  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  41943114 attcaacaacataatctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttcctagccgaataacctctaaatttata 41943213  T
Q  216 cgcatcattctttgctccgcaaacccaaatccaatcg 252  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  41943214 cgcatcattcttcgctccgcaaactcaaatccaatcg 41943250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 3295407 - 3295290
Alignment:
Q  62 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 160  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  3295407 taataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaagac 3295308  T
Q  161 tagagcccttaccttaga 178  Q
    |||||| |||||||||||    
T  3295307 tagagctcttaccttaga 3295290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 10344738 - 10344885
Alignment:
Q  113 caaattcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttac--------cttagatgctctccttcctagccgaataacct 204  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||        ||||||||||||||||||||  ||||||||||    
T  10344738 caaattcaacatcataatctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttagatgctctccttcctaatcgaataacct 10344837  T
Q  205 ctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcg 252  Q
     ||||||||||||||||| |||| |||| || ||| ||| ||||||||    
T  10344838 ttaaatttatacgcatcactcttcgctctgctaactcaactccaatcg 10344885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 31519152 - 31519254
Alignment:
Q  74 ataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 172  Q
    ||||||||||||||||||| ||| | |  ||||| |||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||| ||||    
T  31519152 ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttac 31519251  T
Q  173 ctt 175  Q
    |||    
T  31519252 ctt 31519254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 10336080 - 10336177
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatc 113  Q
    ||||||||||||||||||||||||||||| ||||||||        |||||||||||| ||||||||||||||||||||||||||  ||||| |||||    
T  10336080 aaaattgcaactcaccaattcttataatttgcaactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc 10336177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 9818174 - 9818340
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||  ||||| |||||||    
T  9818174 aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaa 9818273  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818274 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 9818340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 21231845 - 21232007
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||| ||||||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  21231845 aaaattggaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa 21231944  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttaga 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21231945 attcaacatcataatctatcattttcatttaaacacggtcaagactagagccattaccttaga 21232007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 42077468 - 42077625
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    |||||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||  |||||  ||||||    
T  42077468 aaaattgcaactcaccaattcttataattaacaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaa 42077567  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttacc 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  42077568 attcaacatcataatctatcattctcatttaaacatggtcaagactagaacccctacc 42077625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 9881200 - 9881085
Alignment:
Q  62 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatt-taaacatggtcaagac 160  Q
    |||||||||| | |||||||||||||||||||||| |||  | ||| |||||||||| || |||||||||||| |||||||||  ||||||| |||||||    
T  9881200 taataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattcaaaacatgatcaagac 9881101  T
Q  161 tagagcccttacctta 176  Q
    || |||||||||||||    
T  9881100 tatagcccttacctta 9881085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 42077624 - 42077682
Alignment:
Q  194 ccgaataacctctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcg 252  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||||    
T  42077624 ccgaataacctctaaatttatacgcatcattcttcactccgcaaactcaaattcaatcg 42077682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
Q  77 aatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacctt 175  Q
    ||||| |||||||||||| | |||| ||||| |||  |||||||| ||||||| |||||||||||| ||||| ||||||||||||||| | |||||||||    
T  24423320 aatctcttcactcatccaatgaata-agaagcatacaaaattcaatatcataaactatcattttcagttaaatcatggtcaagactagggtccttacctt 24423222  T
Q  176 ag 177  Q
    ||    
T  24423221 ag 24423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 10530137 - 10530303
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||  ||||| |||||||    
T  10530137 aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaa 10530236  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10530237 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgct 10530303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 9745282 - 9745118
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||||||||||||| |||||||||||||||| |||  ||||| |||||||    
T  9745282 aaaattgcaactcaccaattcatataattatcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaa 9745183  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatg 180  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  9745182 attcaacatcataatctatcattttcctttaaacatggtcaagactagagcccttaccttggatg 9745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 29587734 - 29587570
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatctttt-cactcatccattaaatatagaagtatatca 114  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||||| |||||||||||| ||||||||||||||||  ||||| ||||||    
T  29587734 aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcatatca 29587635  T
Q  115 aattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga 178  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  29587634 aattcaacatcataatctatcattttcattcaaatcatggtcaagactagagcccttaccttaga 29587570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 13167996 - 13167881
Alignment:
Q  62 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 160  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13167996 taataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatcatggtcaagac 13167897  T
Q  161 tagagcccttacctta 176  Q
    ||||||||||||||||    
T  13167896 tagagcccttacctta 13167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 8311891 - 8311731
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnn-taataaaa-cacaataaatcttttcactcatccattaaatatagaagtatatc 113  Q
    |||||||||| ||||||||||||||||||| |||||||         |||||||| || ||||||||||||||| |||||||  |||  ||||| || ||    
T  8311891 aaaattgcaaatcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcatgtc 8311792  T
Q  114 aaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacc 173  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||    
T  8311791 aaattcaacatcataatctattattttcagttaaatcatggtcaagactagagcacttacc 8311731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 46002795 - 46002887
Alignment:
Q  71 acaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagacta 162  Q
    ||||| |||||||||||||||||||| |||  ||||| ||||||||||||| |||| || |||| ||||||||||||| |||| |||||||||    
T  46002795 acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagacta 46002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
Q  77 aatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagccctta 171  Q
    ||||| ||||| |||| |||||||  ||||| |||||||||| || ||||||| |||| |||||||| || | |||| ||||||||||||||||||    
T  31211188 aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactagagccctta 31211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 10529527 - 10529564
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactac 53  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  10529527 aaaattgcaactcaccaattcatataattatcaactac 10529564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 31654571 - 31654726
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  31654571 aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa 31654670  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagccctta 171  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31654671 atccaacatcataatctatcattttcatttaaacatggtcaagactagagccctta 31654726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13380218 - 13380378
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||| ||  | |||||||||||||    
T  13380218 aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccatgaatca-agaagtatatcaa 13380316  T
Q  116 attcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacctta 176  Q
    ||||||| |||||| |||||||||||| ||||| |||||||||||||||| |||||||||||    
T  13380317 attcaacgtcataacctatcattttcacttaaatcatggtcaagactagaacccttacctta 13380378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 51443522 - 51443650
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  51443522 aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa 51443621  T
Q  116 attcaacatcataatctatcattttcatt 144  Q
    |||||||||||||||||||||||||||||    
T  51443622 attcaacatcataatctatcattttcatt 51443650  T

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Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 27977147 - 27977323
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||| ||||| |||||||| |||||||        |||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  27977147 aaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa 27977246  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctctccttccta 192  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  27977247 attcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta 27977323  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 28063675 - 28063851
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||| ||||| |||||||| |||||||        |||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  28063675 aaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa 28063774  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctctccttccta 192  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  28063775 attcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta 28063851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 29046559 - 29046702
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||  ||||||||||||        |||||||| ||||||||| |||||| |||||||||||||  || || |||||||    
T  29046559 aaaattgcaactcaccaattctta--attagcaactacaagaaaaataataaaatacaataaatattttcaatcatccattaaatcaaggagcatatcaa 29046656  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagact 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  29046657 attcaacatcataatctatcattttcatttaaacatggtctagact 29046702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 16131078 - 16131237
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||| | | |||||||||||||||||| || ||  | ||||| || || |    
T  16131078 aaaattgcaactcaccaattcatataattatcaactacaaaaaaattaataaaatatagtaaatcttttcactcatctatgaatca-agaagcatgtcga 16131176  T
Q  116 attcaacatcataatctatcattttcatttaaac-atggtcaagactagagcccttacctt 175  Q
    ||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  16131177 attcagcatcataacctatcattttcaattaaaccatggtcaagactagagcccttacctt 16131237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 28497235 - 28497349
Alignment:
Q  62 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 160  Q
    |||||||||| ||||||||||||||||||| ||| ||  | ||||| || || ||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  28497235 taataaaacataataaatcttttcactcattcatgaatca-agaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtcaagac 28497333  T
Q  161 tagagcccttacctta 176  Q
    ||||||||||||||||    
T  28497334 tagagcccttacctta 28497349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 22403819 - 22403747
Alignment:
Q  103 agaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacct 174  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  22403819 agaagcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacct 22403747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 22403915 - 22403839
Alignment:
Q  19 attgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccat 95  Q
    |||||||| ||||||||||||||||||  |||| |        |||||||||| |||||||||||||||||||||||    
T  22403915 attgcaacccaccaattcttataattattaacttcaagaaaattaataaaacataataaatcttttcactcatccat 22403839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 108014 - 107863
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||  || || |||||||    
T  108014 aaaattgcaactcaccaattcttataattagcaactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaa 107915  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107914 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcc 107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 15990169 - 15990391
Alignment:
Q  19 attgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaatt 118  Q
    |||||||| |||||||||||||||||| |||||||        |||||||||| ||||| ||||||||||||||||||||||  ||||| ||||||||||    
T  15990169 attgcaacccaccaattcttataattatcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaatt 15990268  T
Q  119 caacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac--------cttagatgctctccttcctagccgaataacctctaaa 209  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||        ||||||||||||||||| ||| |||||||||| ||||    
T  15990269 caacgtcataatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttagatgctctccttcttagtcgaataacctttaaa 15990368  T
Q  210 tttatacgcatcattctttgctc 232  Q
    | ||||||||||| |||| ||||    
T  15990369 tctatacgcatcactcttcgctc 15990391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 40888687 - 40888848
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||| | ||||||||||||||||||||||| ||  | ||||| |||| ||    
T  40888687 aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaatataataaatcttttcactcatccatgaatca-agaagcatattaa 40888785  T
Q  116 attcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttag 177  Q
    ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  40888786 attcaacgtcataatctatcattttcaattaaatcatggccaagactagggcccttaccttag 40888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
Q  74 ataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 172  Q
    ||||||||||||||||||||||| | |  ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  52641386 ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttac 52641485  T
Q  173 ctta 176  Q
    ||||    
T  52641486 ctta 52641489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 29453806 - 29453643
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaa-cacaataaatcttttcactcatccattaaatatagaagtatatca 114  Q
    ||||||||||||||||||||| |||||||| |||||||        |||||||| || ||||||||||||||||||||||| ||  | ||||| ||||||    
T  29453806 aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaaacataataaatcttttcactcatccatgaatca-agaagcatatca 29453708  T
Q  115 aattcaacatcataatctatc----attttcatttaaacatggtcaagactagagcccttacctt 175  Q
    |||||||  ||||||||||||    |||||||||||||||||||||| ||||||| |||||||||    
T  29453707 aattcaatgtcataatctatctatcattttcatttaaacatggtcaaaactagagtccttacctt 29453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 19544714 - 19544811
Alignment:
Q  73 aataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcattta-aacatggtcaagactagagccctt 170  Q
    |||||||||||||||||||||||  |||  | ||| ||||||| ||||||||||||| |||||| ||||||||| | |||| ||| |||||||||||||    
T  19544714 aataaatcttttcactcatccatcgaatcaataagcatatcaa-ttcaacatcataacctatcactttcatttagatcatgatcatgactagagccctt 19544811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 11650592 - 11650689
Alignment:
Q  86 actcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttagatgct 182  Q
    ||||||| ||| |||  ||||| ||||||||||||| |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||| |||||    
T  11650592 actcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttaccttatatgct 11650689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 2181 - 2023
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactacnnnnnnnntaataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaa 115  Q
    |||||||||| |||||||||| |||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  2181 aaaattgcaagtcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa 2082  T
Q  116 attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttacct 174  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  2081 attcaacatcataatctattgttttcatttaaatatggtcaagactagagcccttacct 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 2545 - 2666
Alignment:
Q  62 taataaaacacaataaatcttttcactcatccattaaatatagaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac 160  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||| ||    
T  2545 taataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaac 2644  T
Q  161 tagagcccttaccttagatgct 182  Q
    ||||||||||||||||||||||    
T  2645 tagagcccttaccttagatgct 2666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 148393 - 148430
Alignment:
Q  16 aaaattgcaactcaccaattcttataattagcaactac 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  148393 aaaattgcaactcaccaattcttataattagcaactac 148430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 18927185 - 18927255
Alignment:
Q  103 agaagtatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttac 172  Q
    ||||| |||||||||||||| |||||| |||| |||||||| ||||  ||||||||||| |||||||||||    
T  18927185 agaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagcccttac 18927255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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