View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_28 (Length: 244)
Name: NF15896_low_28
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 6316037 - 6315825
Alignment:
| Q |
16 |
tctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattag |
115 |
Q |
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| T |
6316037 |
tctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattag |
6315938 |
T |
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| Q |
116 |
gatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtggcgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagat |
215 |
Q |
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| T |
6315937 |
gatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtgccgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagat |
6315838 |
T |
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| Q |
216 |
gcttgtgagttgt |
228 |
Q |
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||||||||||||| |
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| T |
6315837 |
gcttgtgagttgt |
6315825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 55323518 - 55323357
Alignment:
| Q |
18 |
tgagtttctgtttaacatctgtcgtggctgct-gttatttcatcagtttagtacccattg-cgatctattgccgctgtgtttgttctgct-----tgcat |
110 |
Q |
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|||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| || || |
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| T |
55323518 |
tgagtttctgtttaacatctgttgtggcttattgttatttcatcagtttagtacccattgacgatgtgttgccgctgtgtttgctctgctgcatttgtat |
55323419 |
T |
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| Q |
111 |
attaggatcggatcaatgtgcagcattcatttgta-agcttaggtaggtgtggcgtgtgtgt |
171 |
Q |
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| T |
55323418 |
attaggacccgatcaatgtgcaacattcatttgtagtgcttaggtaggtgtgcggtgtgtgt |
55323357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 51819827 - 51819772
Alignment:
| Q |
173 |
aaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagttgt |
228 |
Q |
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|||||||||||||| | ||||||||| || ||| ||||||||||||||||||||| |
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| T |
51819827 |
aaataattggctttgtctgatctgtatcacaataatacaagatgcttgtgagttgt |
51819772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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