View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_low_29 (Length: 243)

Name: NF15896_low_29
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_low_29
NF15896_low_29
[»] chr3 (11 HSPs)
chr3 (17-231)||(13003635-13003849)
chr3 (17-231)||(31251737-31251951)
chr3 (17-231)||(31094432-31094649)
chr3 (92-223)||(27205820-27205951)
chr3 (93-225)||(16162458-16162590)
chr3 (162-226)||(27228539-27228603)
chr3 (172-228)||(25664275-25664331)
chr3 (172-228)||(25670680-25670736)
chr3 (172-228)||(25677085-25677141)
chr3 (172-228)||(25683759-25683815)
chr3 (172-228)||(25657870-25657926)
[»] scaffold0029 (2 HSPs)
scaffold0029 (171-227)||(19183-19239)
scaffold0029 (171-227)||(44195-44251)
[»] chr2 (2 HSPs)
chr2 (171-227)||(33121432-33121488)
chr2 (171-227)||(33131167-33131223)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 13003635 - 13003849
Alignment:
Q  17 ggttttagcttctaaaaccaatcaaattgcacatttaatgattcctttggtgcactgactccactaatgccactaaaatatttgacatcaagtgcagttg 116  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13003635 ggttttagcttcttaaaccaatcaaattgcacatctaatgattcctttggtgcactgactccactaatgccactaaaatatttgacatcaagtgcagttg 13003734  T
Q  117 aaccggcataagcgaaattaactcccttttttatatcatatgggattttggtgatattcttataggccggtaaaaatggcaacccatatgccccagctac 216  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13003735 aaccggcataagcgaaattaactcccttttttatatcatctgggattttggtgatattcttataggccggtaaaaatggcaacccatatgcctcagctac 13003834  T
Q  217 aattaaaatgagaat 231  Q
    |||||||||||||||    
T  13003835 aattaaaatgagaat 13003849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 31251951 - 31251737
Alignment:
Q  17 ggttttagcttctaaaaccaatcaaattgcacatttaatgattcctttggtgcactgactccactaatgccactaaaatatttgacatcaagtgcagttg 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31251951 ggttttagcttcttaaaccaatcaaattgcacatttaatgattcctttggtgcactgactccactaatgccactaaaatatttgacatcaagtgcagttg 31251852  T
Q  117 aaccggcataagcgaaattaactcccttttttatatcatatgggattttggtgatattcttataggccggtaaaaatggcaacccatatgccccagctac 216  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31251851 aaccggcataggcgaaattaactcccttttttatatcatctgggattttggtgatattcttataggccggtaaaaatggcaacccatatgcctcagctac 31251752  T
Q  217 aattaaaatgagaat 231  Q
    |||||||||||||||    
T  31251751 aattaaaatgagaat 31251737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 31094432 - 31094649
Alignment:
Q  17 ggttttagcttctaaaaccaatcaaattgcacatttaatga------ttcctttggtgcactgactccactaatgccactaaaatatttgacatcaagtg 110  Q
    ||||||||||||| ||||||||||||||||||| |||||||      || || ||||| |  ||||||||||   ||||| ||||||| ||  |||||||    
T  31094432 ggttttagcttcttaaaccaatcaaattgcacaattaatgagttatctttctgtggtgtagagactccacta---ccactgaaatattcgatgtcaagtg 31094528  T
Q  111 cagttgaaccggcataagcgaaattaactcccttttttatatcatatgggattttggtgatattcttataggccggtaaaaatggcaacccatatgcccc 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | || ||||||||||||||||| ||||| ||||||||||||| ||||||||| |    
T  31094529 cagttgaaccggcataagcgaaattaactcccttttttacatcaccttggcttttggtgatattcttagaggccagtaaaaatggcaagccatatgcctc 31094628  T
Q  211 agctacaattaaaatgagaat 231  Q
    ||||||| |||||||||||||    
T  31094629 agctacagttaaaatgagaat 31094649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 27205951 - 27205820
Alignment:
Q  92 aaatatttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatatgggattttggtgatattcttataggccggtaaaa 191  Q
    ||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||| | |  ||||||||||||| || |||| ||||||||    
T  27205951 aaataattgacatcaagtgcagttgcaccgccataagcaaaattaactcccttttttacatcatcttgacttttggtgatatttttgtagggcggtaaaa 27205852  T
Q  192 atggcaacccatatgccccagctacaattaaa 223  Q
    ||||||||||||| ||| ||| ||||||||||    
T  27205851 atggcaacccatacgcctcagttacaattaaa 27205820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 16162590 - 16162458
Alignment:
Q  93 aatatttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatatgggattttggtgatattcttataggccggtaaaaa 192  Q
    ||||||||  |||||| ||||| |||||  ||||||| |||||||||||| | ||| |||||  | || ||||||||| |||   | ||||||| |||||    
T  16162590 aatatttgctatcaagagcagtagaacctccataagcaaaattaactcccctctttgtatcaccttggcttttggtgacatttaaagaggccggcaaaaa 16162491  T
Q  193 tggcaacccatatgccccagctacaattaaaat 225  Q
    ||||||||| |||||| |||||| | |||||||    
T  16162490 tggcaacccgtatgcctcagctatatttaaaat 16162458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 27228603 - 27228539
Alignment:
Q  162 ttttggtgatattcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatg 226  Q
    ||||| ||| ||||||||||||||| |||||||||||||| |||||| | ||||||| |||||||    
T  27228603 ttttgttgacattcttataggccggcaaaaatggcaacccgtatgcctcggctacaaataaaatg 27228539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25664331 - 25664275
Alignment:
Q  172 attcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatgag 228  Q
    |||| |||| ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  25664331 attcatatatgccggcaaaaatggtaatccatatgcctcagctacaattaaaatgag 25664275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25670736 - 25670680
Alignment:
Q  172 attcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatgag 228  Q
    |||| |||| ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  25670736 attcatatatgccggcaaaaatggtaatccatatgcctcagctacaattaaaatgag 25670680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25677141 - 25677085
Alignment:
Q  172 attcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatgag 228  Q
    |||| |||| ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  25677141 attcatatatgccggcaaaaatggtaatccatatgcctcagctacaattaaaatgag 25677085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25683815 - 25683759
Alignment:
Q  172 attcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatgag 228  Q
    |||| |||| ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  25683815 attcatatatgccggcaaaaatggtaatccatatgcctcagctacaattaaaatgag 25683759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25657926 - 25657870
Alignment:
Q  172 attcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatgag 228  Q
    |||| |||| ||||| |||||||| || || |||||| |||||||||||||||||||    
T  25657926 attcatatatgccggcaaaaatggtaatccgtatgcctcagctacaattaaaatgag 25657870  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 19183 - 19239
Alignment:
Q  171 tattcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatga 227  Q
    |||||| |||||| || ||||| ||||||||||||||| | ||||||||| ||||||    
T  19183 tattctcataggcaggcaaaaacggcaacccatatgcctcggctacaattgaaatga 19239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 44195 - 44251
Alignment:
Q  171 tattcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatga 227  Q
    |||||| |||||| || ||||| ||||||||||||||| | ||||||||| ||||||    
T  44195 tattctcataggcaggcaaaaacggcaacccatatgcctcggctacaattgaaatga 44251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 33121432 - 33121488
Alignment:
Q  171 tattcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatga 227  Q
    |||||| |||||| || ||||| ||||||||||||||| | ||||||||| ||||||    
T  33121432 tattctcataggcaggcaaaaacggcaacccatatgcctcggctacaattgaaatga 33121488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 33131167 - 33131223
Alignment:
Q  171 tattcttataggccggtaaaaatggcaacccatatgccccagctacaattaaaatga 227  Q
    |||||| |||||| || ||||| ||||||||||||||| | ||||||||| ||||||    
T  33131167 tattctcataggcaggcaaaaacggcaacccatatgcctcggctacaattgaaatga 33131223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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