View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_32 (Length: 237)
Name: NF15896_low_32
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32200716 - 32200938
Alignment:
| Q |
1 |
tgcttatataccatagtcactgagtgttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaactga--atacccaaca |
98 |
Q |
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| T |
32200716 |
tgcttatataccatagtcactgagtgttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaactgaatatacccaaca |
32200815 |
T |
|
| Q |
99 |
aaaccaaatgatacaatgtcaagaaaaacaatcagttgcacatnnnnnnngtattgaccaagcaaaaccttaaatttaaatttaaccaattcaacatgaa |
198 |
Q |
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| T |
32200816 |
aaaccaaatgatacaatgtcaagaaaaacaatcggttgcacataaaaaaagtattgaccaagcaaaaccttaaatttaaatttaaccaattcaaaatgaa |
32200915 |
T |
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| Q |
199 |
cttactgttcctcgagggagaat |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
32200916 |
cttactgttcctcgagggagaat |
32200938 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 5528620 - 5528561
Alignment:
| Q |
27 |
ttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaact |
86 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| | ||||| | ||||||||| |
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| T |
5528620 |
ttgtgacatttcaacaaacaccttgtctgcaaaattcaaacctatactcaaagagtaact |
5528561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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