View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_34 (Length: 231)
Name: NF15896_low_34
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 14743508 - 14743312
Alignment:
| Q |
17 |
ttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattccctccacaagcaagcccatta |
116 |
Q |
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| T |
14743508 |
ttctccttttatgtaaaatcgggggacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattccctccacaagcaagcccatta |
14743409 |
T |
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| Q |
117 |
acccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagttttgaaacttactgtctctt |
213 |
Q |
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| T |
14743408 |
acccaacaaatcaccaaattaacggtatttattgcaatatcgtcattttcactgttcattttccaattctcaagagttttgaaacttactgtctctt |
14743312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 17583575 - 17583770
Alignment:
| Q |
17 |
ttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattccctccacaagcaagcccatta |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17583575 |
ttctccttttatgtaaaatcggttgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattccctccacaagcaagcccatta |
17583674 |
T |
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| Q |
117 |
acccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagttttgaaacttactgtctctt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17583675 |
acccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctc-agagttttgaaacttactgtctctt |
17583770 |
T |
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