View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15896_low_36 (Length: 222)
Name: NF15896_low_36
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 44643961 - 44643773
Alignment:
| Q |
15 |
attattctttgttttcatcaaccctaaataacacatgatcactttatcacataatattcacttcccttcgttagcaagatctgaaaagtgtcactcttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44643961 |
attattctttgttttcatcaaccctaaataacacttgatcggtttatcacataatattcacttcccttcattagcaagatctgaaaagtgtcactcttct |
44643862 |
T |
|
| Q |
115 |
aggacaattttcttttacaaataatgtgattgttattatagaacagatggaggataaaaatgaaataatgtaagaagattgatccctacaag |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44643861 |
aggacaattttcttttaca---aatgtgattgttattatgaaacagatggaggataaaaatgaaataatgtaagaagatcgatccctacaag |
44643773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University