View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15896_low_37 (Length: 213)

Name: NF15896_low_37
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15896_low_37
NF15896_low_37
[»] chr3 (2 HSPs)
chr3 (13-197)||(24219360-24219544)
chr3 (162-197)||(11991151-11991186)
[»] chr6 (30 HSPs)
chr6 (29-192)||(24272077-24272240)
chr6 (29-123)||(24263951-24264045)
chr6 (39-197)||(29882151-29882309)
chr6 (39-197)||(29909307-29909465)
chr6 (39-197)||(29928989-29929147)
chr6 (39-190)||(29358111-29358262)
chr6 (13-119)||(29876515-29876621)
chr6 (29-190)||(28926679-28926840)
chr6 (29-197)||(29099049-29099217)
chr6 (29-197)||(29115967-29116135)
chr6 (39-188)||(29084734-29084883)
chr6 (29-197)||(29905345-29905513)
chr6 (29-123)||(29897783-29897877)
chr6 (152-192)||(24263882-24263922)
chr6 (29-197)||(29073469-29073637)
chr6 (29-197)||(29106042-29106210)
chr6 (157-197)||(29946271-29946311)
chr6 (13-67)||(24890501-24890555)
chr6 (143-197)||(29078347-29078401)
chr6 (152-190)||(29876654-29876692)
chr6 (152-190)||(29887126-29887164)
chr6 (29-67)||(29902962-29903000)
chr6 (164-197)||(16702271-16702304)
chr6 (80-197)||(25450875-25450992)
chr6 (149-190)||(29835041-29835082)
chr6 (149-190)||(29866475-29866516)
chr6 (39-67)||(24730571-24730599)
chr6 (165-197)||(24890371-24890403)
chr6 (39-67)||(29889236-29889264)
chr6 (149-197)||(30118866-30118914)
[»] scaffold0237 (1 HSPs)
scaffold0237 (39-197)||(22059-22217)
[»] scaffold0573 (1 HSPs)
scaffold0573 (29-190)||(3843-4004)
[»] chr1 (2 HSPs)
chr1 (149-197)||(10129963-10130011)
chr1 (26-67)||(10129840-10129881)
[»] scaffold0014 (1 HSPs)
scaffold0014 (155-197)||(140130-140172)
[»] chr2 (2 HSPs)
chr2 (152-197)||(15063001-15063046)
chr2 (39-67)||(15063131-15063159)
[»] scaffold1840 (1 HSPs)
scaffold1840 (155-192)||(1241-1278)
[»] scaffold0572 (1 HSPs)
scaffold0572 (155-192)||(3065-3102)
[»] scaffold0054 (1 HSPs)
scaffold0054 (145-188)||(53730-53773)
[»] scaffold0051 (2 HSPs)
scaffold0051 (157-192)||(43415-43450)
scaffold0051 (155-192)||(48033-48070)
[»] scaffold0019 (1 HSPs)
scaffold0019 (144-192)||(126253-126301)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 24219544 - 24219360
Alignment:
Q  13 gatgaaagaagatgtaaaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaat 112  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||| |||||||||||||     
T  24219544 gatgaaaaaagatgtaaaacctaacattgttacttataactctttaatgaatggatattgtctggtaaatgaggtgaacaaggccgaaagtatattcaac 24219445  T
Q  113 actatggctcaaatctgagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    ||||||||||||||  |||||||   ||||  |||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  24219444 actatggctcaaattggagtggctcctgacgttcatagttacagtatcatgattagtggattttgtaagattaaaatggtggatg 24219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 11991151 - 11991186
Alignment:
Q  162 tgattaatggattttgtaagattaaaatggttgatg 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  11991151 tgattaatggattttgtaagattaaaatggttgatg 11991186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 24272240 - 24272077
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    |||||| || |||||||||||||||||||||||||| || ||  |||||||||||| |||||||||||||| ||||||||||| |||||| |||| |       
T  24272240 aaacctgacgttgttacttataactctttaatggatcgatattgtctggtaaatgaagtgaacaaggccaagagtatattcaacactatgtctcataggg 24272141  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    ||||| |   | |   ||  || ||||||||| |||||||| ||||||||||||||||||||||    
T  24272140 gagtgaccgctaatgttcggagctacagtatcatgattaatagattttgtaagattaaaatggt 24272077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 24264045 - 24263951
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctca 123  Q
    |||||| |||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||| |||||| |||||||| || |||||| ||||    
T  24264045 aaacctgacattgttacttataactctttaatggatggatattgtctggtaaatgaagtgaacatggccaagagtatattaaacactatgtctca 24263951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 29882151 - 29882309
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    |||||||||| | |||||||||||||||| ||  |||||||||||| |||||||||||| | ||||||||||| |||||| |||| |   ||||| |       
T  29882151 ttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcataggggagtgactgc 29882250  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    | |   ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29882251 taatgttcagagctacagtatcatgattaatggattttgtaagattaaaatggtggatg 29882309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 29909307 - 29909465
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    |||||||||| | |||||||||||||||| ||  |||||||||||| |||||||||||| | ||||||||||| |||||| |||| |   ||||| |       
T  29909307 ttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcataggggagtgactgc 29909406  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    | |   ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29909407 taatgttcagagctacagtatcatgattaatggattttgtaagattaaaatggtggatg 29909465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 29928989 - 29929147
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    |||||||||| | |||||||||||||||| ||  ||| |||||||| |||||||||||| | ||||||||||| |||||| |||| |   ||||| |       
T  29928989 ttgttacttacagctctttaatggatggatattgtcttgtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcataggggagtgactgc 29929088  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    | |  || | || ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29929089 taatgctaagagctacagtatcatgattaatggattttgtaagattaaaatggtggatg 29929147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 29358262 - 29358111
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    ||||||||||||||||||||||||||||| || | || || ||  | ||||| ||||| || ||||||||||| |||||||||||  |  |||||         
T  29358262 ttgttacttataactctttaatggatggatatttcctagttaaacaagtgaataaggctaagagtatattcaacactatggctcagttgggagtgagtcc 29358163  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    ||| | ||| |||||||||||| |||||||||| ||||||||||||||||||    
T  29358162 tgatattcagagttacagtatcttgattaatgggttttgtaagattaaaatg 29358111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 29876515 - 29876621
Alignment:
Q  13 gatgaaagaagatgtaaaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaat 112  Q
    ||||||||||| ||| |||||| | ||| |||||||||||||||||||||||||| ||  |||||| || || ||| ||||||| || | |||||||||     
T  29876515 gatgaaagaaggtgtgaaacctgatattattacttataactctttaatggatggatattgtctggttaaagaagtggacaaggctaagaatatattcaac 29876614  T
Q  113 actatgg 119  Q
    |||||||    
T  29876615 actatgg 29876621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 28926840 - 28926679
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||| |||||||||||| |||||||||||||||| ||   || || || || ||||||||||| || ||||||||||| | |||||||||         
T  28926840 aaacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcaggggg 28926741  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    |||||     ||| | ||| ||||||| |||| |||||||||| ||||||||||||||||||    
T  28926740 gagtgaatcctgatattcagagttacaatatcttgattaatgggttttgtaagattaaaatg 28926679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 29099049 - 29099217
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||  ||||||||||||||||||||||||||||| ||   || || || || ||||| ||||| || ||||||||||| |||||||||||         
T  29099049 aaacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcaggggg 29099148  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||     ||| | ||| |||||||||||| ||||||| || |||||||||||||||| | ||||||    
T  29099149 gagtgaatcctgatattcagagttacagtatcatgattaacgggttttgtaagattaaaaagtttgatg 29099217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 29115967 - 29116135
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||  ||||||||||||||||||||||||||||| ||   || || || || ||||| ||||| || ||||||||||| |||||||||||         
T  29115967 aaacctaattttgttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctcaggggg 29116066  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||     ||| | ||| |||||||||||| ||||||| || |||||||||||||||| | ||||||    
T  29116067 gagtgaatcctgatattcagagttacagtatcatgattaacgggttttgtaagattaaaaagtttgatg 29116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 29084734 - 29084883
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    ||||||||||||||||||||||||||||| ||   || || || || ||||| | ||| || ||||||||||| ||||||||||||  | |||||         
T  29084734 ttgttacttataactctttaatggatggatattgcctagttaaagaagtgaatacggctaagagtatattcaacactatggctcaaggcggagtgaatcc 29084833  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaa 188  Q
    ||| | ||  ||||||| |||| |||||||||| ||||||||||||||||    
T  29084834 tgatattcgcagttacaatatcttgattaatgggttttgtaagattaaaa 29084883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 29905345 - 29905513
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||| ||||||||||||||||||||||||||||| ||    |  | || || ||||| ||||| || ||||||||||| |||||||||||         
T  29905345 aaacctaactttgttacttataactctttaatggatggatattgcttacttaaagaagtgaataaggctaagagtatattcaacactatggctcaggagg 29905444  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||     ||  | ||| ||||||| |||| |||||||||| |||||||||||||||| ||||||||    
T  29905445 gagtgaatcctgctattcaaagttacaatatcttgattaatgggttttgtaagattaaaaaggttgatg 29905513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 29897783 - 29897877
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctca 123  Q
    ||||||||  || |||||||||||||||||||||||||| ||   || || || || ||||| ||||| || ||||||||||| |||||||||||    
T  29897783 aaacctaatgtttttacttataactctttaatggatggatattgcctagttaaagaagtgaataaggctaagagtatattcaacactatggctca 29897877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 24263922 - 24263882
Alignment:
Q  152 tacagtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  24263922 tacaatattgtgattaatggattttgtaagattaaaatggt 24263882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 29073469 - 29073637
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||  |||||||||||  |||||||||||||||| ||   || || ||  | ||||| ||||| || ||||||||||| |||||||||||         
T  29073469 aaacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcaggggg 29073568  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||     ||| ||||| ||||||| |||| ||||||| || |||||||||||||||| ||||||||    
T  29073569 gagtgaatcctgatactcagagttacaatatcatgattaacgggttttgtaagattaaaaaggttgatg 29073637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 29106042 - 29106210
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||  |||||||||||  |||||||||||||||| ||   || || ||  | ||||| ||||| || ||||||||||| |||||||||||         
T  29106042 aaacctaatgttgttacttattgctctttaatggatggatattgcctagttaaacaagtgaataaggctaatagtatattcaacactatggctcaggggg 29106141  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||     ||| ||||| ||||||| |||| ||||||| || |||||||||||||||| ||||||||    
T  29106142 gagtgaatcctgatactcagagttacaatatcatgattaacgggttttgtaagattaaaaaggttgatg 29106210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 29946271 - 29946311
Alignment:
Q  157 tatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  29946271 tatcatgattaatggattttgtaagattaaaatggtggatg 29946311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 24890555 - 24890501
Alignment:
Q  13 gatgaaagaagatgtaaaacctaacattgttacttataactctttaatggatgga 67  Q
    ||||||||| ||  |||||||| |  |||||||||||||||||||||||||||||    
T  24890555 gatgaaagacgacataaaacctgatgttgttacttataactctttaatggatgga 24890501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 29078347 - 29078401
Alignment:
Q  143 actcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    ||||| ||||||| |||| ||||||| || |||||||||||||||| ||||||||    
T  29078347 actcagagttacaatatcatgattaacgggttttgtaagattaaaaaggttgatg 29078401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 29876654 - 29876692
Alignment:
Q  152 tacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  29876654 tacagtatcatgattaatggattttgtaaggttaaaatg 29876692  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 29887126 - 29887164
Alignment:
Q  152 tacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  29887126 tacaatatcatgattaatggattttgtaagattaaaatg 29887164  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 29902962 - 29903000
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatgga 67  Q
    |||||| || |||||||||||||||||||||||||||||    
T  29902962 aaacctgacgttgttacttataactctttaatggatgga 29903000  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 16702304 - 16702271
Alignment:
Q  164 attaatggattttgtaagattaaaatggttgatg 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  16702304 attaatggattatgtaagattaaaatggttgatg 16702271  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 25450875 - 25450992
Alignment:
Q  80 aatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatttgacactcatagttacagtatcgtgattaatggattttgta 179  Q
    ||||| |||||| ||||||| || |||||||| | |||| ||||||   ||||| | ||||||  || ||| |||| |||| |||||| |  ||||||||    
T  25450875 aatgaagtgaacgaggccaagagaatattcaaaagtatgactcaaaggggagtgacttttgacgttcttagctacactatcatgattagtaaattttgta 25450974  T
Q  180 agattaaaatggttgatg 197  Q
    ||||||||||||| ||||    
T  25450975 agattaaaatggtggatg 25450992  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 29835041 - 29835082
Alignment:
Q  149 agttacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    |||||||||||| ||||||||||  |||||||||||||||||    
T  29835041 agttacagtatcttgattaatgggctttgtaagattaaaatg 29835082  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 29866475 - 29866516
Alignment:
Q  149 agttacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    |||||||||||| ||||||||||  |||||||||||||||||    
T  29866475 agttacagtatcttgattaatgggctttgtaagattaaaatg 29866516  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 24730571 - 24730599
Alignment:
Q  39 ttgttacttataactctttaatggatgga 67  Q
    |||||||||||||||||||||||||||||    
T  24730571 ttgttacttataactctttaatggatgga 24730599  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 24890403 - 24890371
Alignment:
Q  165 ttaatggattttgtaagattaaaatggttgatg 197  Q
    |||||||||||||||||||||||||||| ||||    
T  24890403 ttaatggattttgtaagattaaaatggtggatg 24890371  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 29889236 - 29889264
Alignment:
Q  39 ttgttacttataactctttaatggatgga 67  Q
    |||||||||||||||||||||||||||||    
T  29889236 ttgttacttataactctttaatggatgga 29889264  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 30118914 - 30118866
Alignment:
Q  149 agttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    ||||||| |||| |||||||||| |||||||||||||||| ||| ||||    
T  30118914 agttacaatatcttgattaatgggttttgtaagattaaaaaggtcgatg 30118866  T

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Target: scaffold0237 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 22059 - 22217
Alignment:
Q  39 ttgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatctgagtggcatt 138  Q
    |||||||||| | |||||||||||||||| ||  |||||||||||| |||||||||||| | ||||||||||| |||||| |||| |   | ||| |       
T  22059 ttgttacttacagctctttaatggatggatattgtctggtaaatgaagtgaacaaggccgagagtatattcaacactatgtctcataggggtgtgactgc 22158  T
Q  139 tgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    | |   ||| || |||| |||| ||||||||||||||||||||||||||||||| ||||    
T  22159 taatgttcagagctacaatatcatgattaatggattttgtaagattaaaatggtggatg 22217  T

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Target: scaffold0573 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 3843 - 4004
Alignment:
Q  29 aaacctaacattgttacttataactctttaatggatggacatcttctggtaaatgaggtgaacaaggccaaaagtatattcaatactatggctcaaatct 128  Q
    ||||||||| |||||||||||| |||||||||||||||| ||   || || || || ||||||||||| || ||||||||||| | |||||||||         
T  3843 aaacctaacgttgttacttatagctctttaatggatggatattgccttgttaaagaagtgaacaaggctaagagtatattcaacaatatggctcaggggg 3942  T
Q  129 gagtggcatttgacactcatagttacagtatcgtgattaatggattttgtaagattaaaatg 190  Q
    |||||     ||| | ||| ||||||| |||| |||||||||| ||||||||||||||||||    
T  3943 gagtgaatcctgatattcagagttacaatatcttgattaatgggttttgtaagattaaaatg 4004  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 10129963 - 10130011
Alignment:
Q  149 agttacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  10129963 agttacagtatcatgattaatggattttgtaagattaaaatggtggatg 10130011  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 10129840 - 10129881
Alignment:
Q  26 gtaaaacctaacattgttacttataactctttaatggatgga 67  Q
    |||||||||||| ||||||||||||| |||||||| ||||||    
T  10129840 gtaaaacctaacgttgttacttataattctttaatagatgga 10129881  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 140130 - 140172
Alignment:
Q  155 agtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  140130 agtatcatgattaatggattttgtaagattaaaatggttgatg 140172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 15063046 - 15063001
Alignment:
Q  152 tacagtatcgtgattaatggattttgtaagattaaaatggttgatg 197  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  15063046 tacagtatcatgattaatggattttgtaagattaaaatggtagatg 15063001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 15063159 - 15063131
Alignment:
Q  39 ttgttacttataactctttaatggatgga 67  Q
    |||||||||||||||||||||||||||||    
T  15063159 ttgttacttataactctttaatggatgga 15063131  T

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Target: scaffold1840 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 1241 - 1278
Alignment:
Q  155 agtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1241 agtatcgtgattaatggattctgtaagattaaaatggt 1278  T

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Target: scaffold0572 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 3065 - 3102
Alignment:
Q  155 agtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    |||||||||||||||||||| |||||||||||||||||    
T  3065 agtatcgtgattaatggattctgtaagattaaaatggt 3102  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 53773 - 53730
Alignment:
Q  145 tcatagttacagtatcgtgattaatggattttgtaagattaaaa 188  Q
    |||||| |||| |||| |||||||||||||||||||||||||||    
T  53773 tcatagctacaatatcatgattaatggattttgtaagattaaaa 53730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 43450 - 43415
Alignment:
Q  157 tatcgtgattaatggattttgtaagattaaaatggt 192  Q
    |||| |||||||||||||||||||||||||||||||    
T  43450 tatcatgattaatggattttgtaagattaaaatggt 43415  T

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Target: scaffold0051; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 48070 - 48033
Alignment:
Q  155 agtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  48070 agtatcatgattaatggattctgtaagattaaaatggt 48033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 126301 - 126253
Alignment:
Q  144 ctcatagttacagtatcgtgattaatggattttgtaagattaaaatggt 192  Q
    ||||||| || |||||| ||||||||||||| |||||| ||||||||||    
T  126301 ctcatagctatagtatcatgattaatggattatgtaaggttaaaatggt 126253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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