View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_38 (Length: 211)
Name: NF15896_low_38
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_38 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 35630999 - 35631163
Alignment:
| Q |
16 |
aacatatattgtatgtcatttgtttacgtttgttatgaaatcgcttgcactgcttaaaatgaatacattattgcacctgacagttctggcatgagatata |
115 |
Q |
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| T |
35630999 |
aacatatattgtatgtcatttctttacgtttgttatgaaatcgcttgcactgcttaaaatgaatacattattgcacctgacggttctggcatgagatata |
35631098 |
T |
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| Q |
116 |
gtatttatagttttataccttcatgaaaagcttagaagaagtgtatcatgagatatgaacctcga |
180 |
Q |
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| T |
35631099 |
gtatttatagttttataccttcatgaaaagcttagaagaagtgtatcatgagatatgaacctcga |
35631163 |
T |
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Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 31094723 - 31094613
Alignment:
| Q |
68 |
cttaaaatgaatacattattgcacctgacagttctggcatgagatatagtatttatagttttataccttcatgaaaagcttagaagaagtgtatcatgag |
167 |
Q |
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| T |
31094723 |
cttaaagtgaatacgttatcgcacttgacagttttcgcatgggatggagtatttatagttttataccttaatgaaaagcttagaagaagtgtttcatgag |
31094624 |
T |
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| Q |
168 |
atatgaacctc |
178 |
Q |
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| T |
31094623 |
atctaaacctc |
31094613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 52127 - 52216
Alignment:
| Q |
68 |
cttaaaatgaatacattattgcacctgacagttctggcatgagatatagtatttatagttttataccttcatgaaaagcttagaagaagt |
157 |
Q |
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| T |
52127 |
cttaaagtgaatacattatcgcacctgacagttttggcatgggatggagtatttatagttttataacttcttgaaaagcttagaagaagt |
52216 |
T |
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