View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15896_low_7 (Length: 509)
Name: NF15896_low_7
Description: NF15896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15896_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 36888664 - 36889137
Alignment:
| Q |
13 |
aaaatagcaacaacgagaataatattttgtccaaaagaaacaagaatactagaataatgtcgttctatatcttacactctctttatctctttttgtctga |
112 |
Q |
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| T |
36888664 |
aaaatagcaacaacgagaataatattttgtccaaaagaaacaagaatactagaataatgtcgttctataacttacactctcttt--------ttgtctga |
36888755 |
T |
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| Q |
113 |
ttctctcagccacacagtgaaaaggctnnnnnnnngtaacgataactacaaatcaatagttcataaaaaggaagaagacaactgaaaaatgatttacaag |
212 |
Q |
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| T |
36888756 |
ttctctcagccacacagtgaaaaagctaaaaaaaagtaacgataactacaaatcagtagttcataaaaaggaagaagacaactgaaaaatgatttacaag |
36888855 |
T |
|
| Q |
213 |
gcataatagcaaattgaaaat----aaccaaagtaaagtttttcccc-tatcatatattttattcgctagctacacccctccaattaagttcacatctat |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36888856 |
gcataatagcaaattgaaaattaataaccaaagtaaagtttttccccctctcatatattttattcgctagctacacccctccaattaagttcacatctat |
36888955 |
T |
|
| Q |
308 |
aacataatattagttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatannnnnnnaataa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36888956 |
aacataatattagttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatatttttttaataa |
36889055 |
T |
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| Q |
408 |
gcaatagattcatcagtataaaattaacggcaattgatgaatgatgatacattatgaccacgaacaaaattaatctagccatat |
491 |
Q |
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| T |
36889056 |
gcaat--attcttcagtataaaattaacggcaattgatgaatcatgatacattatgaccacgaacaaaattaatctagccatat |
36889137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 36875285 - 36875336
Alignment:
| Q |
30 |
aataatattttgtccaaaagaaacaagaatactagaataatgtcgttctata |
81 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||||| || ||||| |
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| T |
36875285 |
aataatgttttgtccaaaagaaaaaagaatacaagaataatgttgtcctata |
36875336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 36888602 - 36888631
Alignment:
| Q |
13 |
aaaatagcaacaacgagaataatattttgt |
42 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36888602 |
aaaatagcaacaacgagaataatattttgt |
36888631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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