View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15897_low_1 (Length: 627)

Name: NF15897_low_1
Description: NF15897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15897_low_1
NF15897_low_1
[»] scaffold0166 (5 HSPs)
scaffold0166 (10-226)||(19684-19900)
scaffold0166 (511-608)||(20214-20310)
scaffold0166 (467-527)||(20135-20195)
scaffold0166 (563-608)||(34086-34131)
scaffold0166 (371-434)||(19906-19971)
[»] chr5 (7 HSPs)
chr5 (10-226)||(24777301-24777517)
chr5 (511-608)||(24777831-24777927)
chr5 (467-527)||(24777752-24777812)
chr5 (563-608)||(24650631-24650676)
chr5 (563-608)||(24791703-24791748)
chr5 (371-434)||(24777523-24777588)
chr5 (335-391)||(39007059-39007115)
[»] chr4 (5 HSPs)
chr4 (335-434)||(31862467-31862568)
chr4 (347-408)||(24786337-24786398)
chr4 (347-408)||(24821866-24821927)
chr4 (280-313)||(28792308-28792341)
chr4 (208-251)||(16600825-16600868)
[»] chr8 (2 HSPs)
chr8 (334-434)||(15552941-15553043)
chr8 (207-250)||(24315189-24315232)
[»] chr1 (5 HSPs)
chr1 (161-245)||(10430785-10430867)
chr1 (335-432)||(47220689-47220788)
chr1 (362-408)||(14258160-14258206)
chr1 (105-155)||(30730040-30730090)
chr1 (332-408)||(38508309-38508385)
[»] chr6 (1 HSPs)
chr6 (211-245)||(7653134-7653168)
[»] chr3 (2 HSPs)
chr3 (335-385)||(29247268-29247318)
chr3 (207-243)||(27541074-27541110)


Alignment Details
Target: scaffold0166 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 19684 - 19900
Alignment:
Q  10 agaagcaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19684 agaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc 19783  T
Q  110 actcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19784 actcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg 19883  T
Q  210 ctgcgctcatgctaggt 226  Q
    |||||||||||||||||    
T  19884 ctgcgctcatgctaggt 19900  T

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Target: scaffold0166; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 511 - 608
Target Start/End: Original strand, 20214 - 20310
Alignment:
Q  511 aaagaaaaattgtcaacttgtgctactaacaatcaaccgagttagtcccattaccttattcataagtcatagcaaaactgaatattaacacgaaaaca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20214 aaagaaaaattgtcaacttgtgctactaacaatcaaccgagttagtcccattaccttattcat-agtcatagcaaaactgaatattaacacgaaaaca 20310  T

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Target: scaffold0166; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 20135 - 20195
Alignment:
Q  467 gatgggtaatctagaaaaaaccaatattctctggatttagtacaaaagaaaaattgtcaac 527  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||    
T  20135 gatgggtaatctaaagaaaaccaatattctctagatttagtacaaaagaaaaattgtcaac 20195  T

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Target: scaffold0166; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 34131 - 34086
Alignment:
Q  563 accttattcataagtcatagcaaaactgaatattaacacgaaaaca 608  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||    
T  34131 accttattcacaagtcaaagcaaaactgaatattaacacgaaaaca 34086  T

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Target: scaffold0166; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 19906 - 19971
Alignment:
Q  371 aagcaaatgtagaaacttttgtattgaaaattgtataaccaaggcttc--aagtcaaaaaagtgtc 434  Q
    |||||||||||||| |||||| |||||||||||| ||||||||| |||  ||||||||| ||||||    
T  19906 aagcaaatgtagaagcttttgcattgaaaattgtgtaaccaaggtttcaaaagtcaaaagagtgtc 19971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 24777301 - 24777517
Alignment:
Q  10 agaagcaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24777301 agaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc 24777400  T
Q  110 actcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24777401 actcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg 24777500  T
Q  210 ctgcgctcatgctaggt 226  Q
    |||||||||||||||||    
T  24777501 ctgcgctcatgctaggt 24777517  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 511 - 608
Target Start/End: Original strand, 24777831 - 24777927
Alignment:
Q  511 aaagaaaaattgtcaacttgtgctactaacaatcaaccgagttagtcccattaccttattcataagtcatagcaaaactgaatattaacacgaaaaca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24777831 aaagaaaaattgtcaacttgtgctactaacaatcaaccgagttagtcccattaccttattcat-agtcatagcaaaactgaatattaacacgaaaaca 24777927  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 24777752 - 24777812
Alignment:
Q  467 gatgggtaatctagaaaaaaccaatattctctggatttagtacaaaagaaaaattgtcaac 527  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||    
T  24777752 gatgggtaatctaaagaaaaccaatattctctagatttagtacaaaagaaaaattgtcaac 24777812  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 24650676 - 24650631
Alignment:
Q  563 accttattcataagtcatagcaaaactgaatattaacacgaaaaca 608  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||    
T  24650676 accttattcacaagtcaaagcaaaactgaatattaacacgaaaaca 24650631  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 24791748 - 24791703
Alignment:
Q  563 accttattcataagtcatagcaaaactgaatattaacacgaaaaca 608  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||    
T  24791748 accttattcacaagtcaaagcaaaactgaatattaacacgaaaaca 24791703  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 24777523 - 24777588
Alignment:
Q  371 aagcaaatgtagaaacttttgtattgaaaattgtataaccaaggcttc--aagtcaaaaaagtgtc 434  Q
    |||||||||||||| |||||| |||||||||||| ||||||||| |||  ||||||||| ||||||    
T  24777523 aagcaaatgtagaagcttttgcattgaaaattgtgtaaccaaggtttcaaaagtcaaaagagtgtc 24777588  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 39007115 - 39007059
Alignment:
Q  335 aaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaacttttg 391  Q
    ||||||||| || |||| ||||| || || |||||||||||||||||||||||||||    
T  39007115 aaatgttaatcggtgcttccggggcactgattaaagaagcaaatgtagaaacttttg 39007059  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 31862467 - 31862568
Alignment:
Q  335 aaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataaccaaggcttca--agtcaaaaaagtg 432  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||| |||||||||||| ||| ||| ||||||  |||||||||||||    
T  31862467 aaatgttaaccgatgctcccggaacactggttaaggaagcaaatatagaaacttttgcattgaaaattgtctaatcaatgcttcaagagtcaaaaaagtg 31862566  T
Q  433 tc 434  Q
    ||    
T  31862567 tc 31862568  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 24786398 - 24786337
Alignment:
Q  347 atgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataa 408  Q
    ||||||| ||| || ||||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  24786398 atgctcctggggcactggttaaggaagcaaatatagtaacttttgtattggaaattgtataa 24786337  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 24821866 - 24821927
Alignment:
Q  347 atgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataa 408  Q
    ||||||| ||| || ||||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  24821866 atgctcctggggcactggttaaggaagcaaatatagtaacttttgtattggaaattgtataa 24821927  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 28792308 - 28792341
Alignment:
Q  280 aaaaaagcctcatataaattttaaaaatactttt 313  Q
    ||||||||||||||||||||||||||||||||||    
T  28792308 aaaaaagcctcatataaattttaaaaatactttt 28792341  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 16600825 - 16600868
Alignment:
Q  208 ggctgcgctcatgctaggtgcaaaccctagcagagcgaatcatg 251  Q
    |||||||||| |||||||||||||||||| |||||||| |||||    
T  16600825 ggctgcgctcttgctaggtgcaaaccctaacagagcgattcatg 16600868  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 15552941 - 15553043
Alignment:
Q  334 aaaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataaccaaggcttc--aagtcaaaaaagt 431  Q
    ||||| ||||||| |||||||| |||| ||||||| ||||||||| ||| |||||||| |||||||||||||||| ||| |||||  |||||||||||||    
T  15552941 aaaatattaaccggtgctcccgagacactggttaaggaagcaaatatagtaacttttgcattgaaaattgtataatcaatgcttctaaagtcaaaaaagt 15553040  T
Q  432 gtc 434  Q
    |||    
T  15553041 gtc 15553043  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 24315232 - 24315189
Alignment:
Q  207 gggctgcgctcatgctaggtgcaaaccctagcagagcgaatcat 250  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||    
T  24315232 gggcagcgctcatgctaggtgcaaactctagcagagcgattcat 24315189  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 10430867 - 10430785
Alignment:
Q  161 aatcaattggaacaaagcaatttgagaataaattttgaaatcttaggggctgcgctcatgctaggtgcaaaccctagcagagcga 245  Q
    ||||||||| ||||||||||||||   || |||||  ||||  |||||||||||||||||||||||||||||||||| |||||||    
T  10430867 aatcaattgaaacaaagcaatttggtgatgaatttgaaaat--taggggctgcgctcatgctaggtgcaaaccctagaagagcga 10430785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 47220788 - 47220689
Alignment:
Q  335 aaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataaccaaggcttc--aagtcaaaaaagtg 432  Q
    |||||||||||| ||||||  |||||  | ||||  |||||||| || || ||||||||||||||||||| ||| |||| ||||  ||||||||||||||    
T  47220788 aaatgttaaccgctgctcctaggacaccgattaagaaagcaaatataaaagcttttgtattgaaaattgtgtaatcaagacttcaaaagtcaaaaaagtg 47220689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 14258160 - 14258206
Alignment:
Q  362 tggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataa 408  Q
    ||||||||||||||||| ||| ||||||||||| ||||| |||||||    
T  14258160 tggttaaagaagcaaatatagtaacttttgtatcgaaaactgtataa 14258206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 30730090 - 30730040
Alignment:
Q  105 ctagcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtggag 155  Q
    ||||||||||||||||| ||||| || || || ||||||||||||||||||    
T  30730090 ctagcactcacaatgaatttgaatgagcaagtaatgaatatgtgagtggag 30730040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 38508385 - 38508309
Alignment:
Q  332 gaaaaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaacttttgtattgaaaattgtataa 408  Q
    ||||||||||||||| ||  | || || | ||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  38508385 gaaaaatgttaaccggtgtcctcgagatactggttaaggaagcaaatatagtaacttttatattgaaaattgcataa 38508309  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 7653168 - 7653134
Alignment:
Q  211 tgcgctcatgctaggtgcaaaccctagcagagcga 245  Q
    ||||||| |||||||||||||||||||||||||||    
T  7653168 tgcgctcttgctaggtgcaaaccctagcagagcga 7653134  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 29247268 - 29247318
Alignment:
Q  335 aaatgttaaccgatgctcccgggacaatggttaaagaagcaaatgtagaaa 385  Q
    |||||||||||||||| |||||| |||||||||| |||  |||||||||||    
T  29247268 aaatgttaaccgatgcccccggggcaatggttaaggaattaaatgtagaaa 29247318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 27541074 - 27541110
Alignment:
Q  207 gggctgcgctcatgctaggtgcaaaccctagcagagc 243  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  27541074 gggctgcgctcttgctaggtgcaaaccctagtagagc 27541110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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