View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15897_low_2 (Length: 518)
Name: NF15897_low_2
Description: NF15897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15897_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 39934607 - 39934321
Alignment:
| Q |
5 |
caacggttgcaaaagtttgaacaaacatgtgttggttgcaacatgtttgttgattatgtgaaagaaacttagttgactcctcattaagaaagacctgtag |
104 |
Q |
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| T |
39934607 |
caacggttgcaaaagtttgaacaaacatgtgttggttgcaacatgtttgttgattatgtgaaagaaacttagttgactcctcattaagaaagacctgtag |
39934508 |
T |
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| Q |
105 |
aagtatggattaaaggagtaatgcatatggggaactcaacgagtagtgtgattacatttgcgtgacaattgtttaattatttcataaaatgatgtccaat |
204 |
Q |
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| T |
39934507 |
aagtatggattaaaggagtaatgcatatggggaactcaacgagtagtgtgattacatttgcgtgacaattgtttaattatttcataaaatgatgtccaat |
39934408 |
T |
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| Q |
205 |
aggataattttaannnnnnnncattgcattagattgacttttacatgatattttgtacattttaacttcaccgatttggttgattcg |
291 |
Q |
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| T |
39934407 |
aggataattttaattttttttcattgcattagattgacttttacatgatattttgttcattttaacttcaccaatttggttgattcg |
39934321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 343 - 472
Target Start/End: Complemental strand, 39934270 - 39934140
Alignment:
| Q |
343 |
ctgctttatgagttcatgttggactctctttctagggtcaagtttacaatttctactttt-aggnnnnnnnaaggagaaattctgggttcatggtgttga |
441 |
Q |
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| T |
39934270 |
ctgctttatgagttcatgttggactctctttctagggtcaagtttacaatttctactttttaggtttttttaaggagaaattctgggttcatggtgttga |
39934171 |
T |
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| Q |
442 |
taccaagttttagacatgttgattatgtggg |
472 |
Q |
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| T |
39934170 |
taccaagttgtagacatgttgattatgtggg |
39934140 |
T |
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