View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15897_low_4 (Length: 390)

Name: NF15897_low_4
Description: NF15897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15897_low_4
NF15897_low_4
[»] chr7 (1 HSPs)
chr7 (17-327)||(37147479-37147788)
[»] chr1 (8 HSPs)
chr1 (18-328)||(46621348-46621658)
chr1 (18-337)||(46627060-46627391)
chr1 (92-263)||(15800356-15800527)
chr1 (193-263)||(15820828-15820898)
chr1 (190-264)||(15829939-15830013)
chr1 (190-264)||(15831667-15831741)
chr1 (190-264)||(15833394-15833468)
chr1 (192-263)||(15828314-15828385)
[»] chr5 (6 HSPs)
chr5 (57-180)||(39174079-39174202)
chr5 (190-266)||(37328099-37328175)
chr5 (192-259)||(22654325-22654392)
chr5 (102-134)||(38750124-38750156)
chr5 (102-134)||(38865932-38865964)
chr5 (102-134)||(39310678-39310710)
[»] scaffold0496 (1 HSPs)
scaffold0496 (17-154)||(12299-12436)
[»] scaffold0754 (1 HSPs)
scaffold0754 (190-264)||(3910-3984)
[»] scaffold0563 (5 HSPs)
scaffold0563 (190-264)||(10442-10516)
scaffold0563 (190-264)||(760-834)
scaffold0563 (190-264)||(3283-3357)
scaffold0563 (190-264)||(5111-5185)
scaffold0563 (190-264)||(7577-7651)
[»] scaffold0492 (1 HSPs)
scaffold0492 (190-264)||(802-876)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 37147479 - 37147788
Alignment:
Q  17 ataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtcca 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  37147479 ataacatcaacttgtaacccaagtgggggcaacaatgtggtggaacatggcttaggatttgccaggttgggttagtggctgcaccatgctggcctgccca 37147578  T
Q  117 ctccaagttgagagttggccaatgggtcctaggtgaaggcttgagtctccttggtcctagactggtggacatagcgtgaggctggcttcacagagcagtg 216  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||| |    
T  37147579 ctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcctagactggcgggcactgcgtgaggctggcttcacagagcagcg 37147678  T
Q  217 agtaccactggctcttgacagtggagggataacaggctgctgcacttctagcctaccatgcctggttagcctagccacatgaaccaccacttttttgttt 316  Q
    |||||  | | ||||||||||||||||||||||||||||||||||| |||||| || | ||||||| |||||||| |||||||||||||| |||||||||    
T  37147679 agtactgccgcctcttgacagtggagggataacaggctgctgcactgctagcccacaaagcctggtgagcctagctacatgaaccaccac-tttttgttt 37147777  T
Q  317 caagtgtcact 327  Q
    |||| ||||||    
T  37147778 caagcgtcact 37147788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 46621658 - 46621348
Alignment:
Q  18 taacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccac 117  Q
    |||| |||||||||||||||||||||||||  || | | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  46621658 taacttcaacttgtaacccaagtgggggcatgaaggtgatggaacatggcttaagatttgccaggttgggttggtggctgcaccatgctggcctgcccac 46621559  T
Q  118 tccaagttgagagttggccaatgggtcctaggtgaaggcttgagtctccttggtcctagactggtggacatagcgtgaggctggcttcacagagcagtga 217  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| || ||  | |||||||||| ||||||||||||  |    
T  46621558 tccaagttgagagttggccaatgtgacctaggcgaaggcttgagtctccttggtcctagactggagggcactgtgtgaggctggtttcacagagcagcaa 46621459  T
Q  218 gtaccactggctcttgacagtggagggataacaggctgctgcacttctagcctaccatgcctggttagcctagccacatgaaccaccacttttttgtttc 317  Q
      ||| | | |||||||||||||||||||||| ||| ||||||||||||| | |  ||||||||| ||||||||||| ||||||||||||||||||||||    
T  46621458 acacctccgtctcttgacagtggagggataactggccgctgcacttctagtccaatatgcctggtgagcctagccacctgaaccaccacttttttgtttc 46621359  T
Q  318 aagtgtcactt 328  Q
    |||||||||||    
T  46621358 aagtgtcactt 46621348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 46627391 - 46627060
Alignment:
Q  18 taacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccac 117  Q
    |||| |||||||||||| ||||||||||||  || | | |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |    
T  46627391 taacttcaacttgtaactcaagtgggggcatgaaggtgatggaacatggcttaggatttgccaggttgggttggtggctgcaccatgccggcctgcccgc 46627292  T
Q  118 tccaagttgagagtt-ggccaatgggtcctaggtgaaggcttgagtctccttggt------cctagactggtggacatagcgtgaggctggcttcacaga 210  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||      |||||||||| || ||  | |||||||||| ||||||||    
T  46627291 tccaagttgagagttgggccaatgggacctaggcgaaggcttgagtctccttggtcctagacctagactggagggcactgtgtgaggctggtttcacaga 46627192  T
Q  211 gcagtgagtaccactggctcttgac----agtggagggataacaggctgctgcacttctagcctaccatgcctggttagcctagccacatgaaccaccac 306  Q
    ||||  |  ||| | ||||||||||    |||||||||||||| ||| ||||||||||||||| |  ||||||||| ||||||||||| |||||||| ||    
T  46627191 gcagcaaacacctccggctcttgacagtgagtggagggataactggccgctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaac 46627092  T
Q  307 -ttttttgtttcaagtgtcacttgttacataa 337  Q
     ||||||||||||||| ||||||||| |||||    
T  46627091 tttttttgtttcaagtatcacttgttccataa 46627060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 15800527 - 15800356
Alignment:
Q  92 tggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggtcctaggtgaaggcttgagtctccttggtcctagactggtggacatagc 191  Q
    ||||||||  ||||||||||| || |||||||||||||||||| | | ||| | |  | |||||| |  ||||| | | ||||||||  | ||  || ||    
T  15800527 tggctgcaatatgctggcctgcccgctccaagttgagagttggtccacgggacttgtgcgaaggcctatgtctcttggttcctagacgagagggaatggc 15800428  T
Q  192 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 263  Q
    |||||||||| |||||||||||| || |||| ||||||| ||||||||||||||| || |||||||||||||    
T  15800427 gtgaggctggtttcacagagcagcgaatacctctggctcctgacagtggagggattacgggctgctgcactt 15800356  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 15820898 - 15820828
Alignment:
Q  193 tgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 263  Q
    ||||||||| ||||||||||| ||| |||  ||||||| ||||||||||||||| ||||||||| ||||||    
T  15820898 tgaggctggtttcacagagcaatgaatacatctggctcctgacagtggagggattacaggctgcagcactt 15820828  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 15830013 - 15829939
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15830013 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15829939  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 15831741 - 15831667
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15831741 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15831667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 15833468 - 15833394
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15833468 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15833394  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 15828385 - 15828314
Alignment:
Q  192 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 263  Q
    |||||||||| |||||| ||||| || |||| || |||| ||||||||||| ||| ||||||||||||||||    
T  15828385 gtgaggctggtttcacaaagcagcgaatacctctagctcctgacagtggagtgattacaggctgctgcactt 15828314  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 39174202 - 39174079
Alignment:
Q  57 tggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggtcctaggtgaaggc 156  Q
    ||||| ||||||||| |||||||| ||||||| | | |||||||||| |||||||||||||| |||||||||||||||||||  || |||||| |||| |    
T  39174202 tggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaagac 39174103  T
Q  157 ttgagtctccttggtcctagactg 180  Q
    | ||||||||||||| | ||||||    
T  39174102 tcgagtctccttggtacaagactg 39174079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 37328175 - 37328099
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttcta 266  Q
    |||||||||||| ||| |||||||| ||  ||| ||||||||||||||||||||||||||| ||||| ||| |||||    
T  37328175 gcgtgaggctggtttcgcagagcagcgaagacctctggctcttgacagtggagggataacaagctgcagcagttcta 37328099  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 22654325 - 22654392
Alignment:
Q  192 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgc 259  Q
    |||||||||| |||||| ||||| || |||| ||||||||||| ||||||||||||||| ||||||||    
T  22654325 gtgaggctggtttcacatagcagcgaatacctctggctcttgatagtggagggataacaagctgctgc 22654392  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 38750124 - 38750156
Alignment:
Q  102 atgctggcctgtccactccaagttgagagttgg 134  Q
    ||||||||||| |||||||||||||||||||||    
T  38750124 atgctggcctgcccactccaagttgagagttgg 38750156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 38865964 - 38865932
Alignment:
Q  102 atgctggcctgtccactccaagttgagagttgg 134  Q
    ||||||||||| |||||||||||||||||||||    
T  38865964 atgctggcctgcccactccaagttgagagttgg 38865932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 39310710 - 39310678
Alignment:
Q  102 atgctggcctgtccactccaagttgagagttgg 134  Q
    ||||||||||| |||||||||||||||||||||    
T  39310710 atgctggcctgcccactccaagttgagagttgg 39310678  T

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Target: scaffold0496 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 12436 - 12299
Alignment:
Q  17 ataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtcca 116  Q
    |||||| |||||||||| | ||||||||||| |||   ||| ||||||| || | |||||| || ||||||| | || || ||| ||||||||||| |||    
T  12436 ataacaccaacttgtaatctaagtgggggcatcaagatggtagaacatgactaaagatttgtcatgttgggttgatgacttcactatgctggcctgacca 12337  T
Q  117 ctccaagttgagagttggccaatgggtcctaggtgaag 154  Q
    |||||||||||||||||| ||||||| |||||| ||||    
T  12336 ctccaagttgagagttggtcaatgggacctaggcgaag 12299  T

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Target: scaffold0754 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 3910 - 3984
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  3910 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 3984  T

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Target: scaffold0563 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 10442 - 10516
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  10442 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 10516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 760 - 834
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||| ||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  760 gcgtgaggttggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 3357 - 3283
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  3357 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 3283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 5185 - 5111
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  5185 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 5111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 7577 - 7651
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  7577 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 7651  T

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Target: scaffold0492 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 802 - 876
Alignment:
Q  190 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 264  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  802 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 876  T

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