View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15897_low_6 (Length: 329)
Name: NF15897_low_6
Description: NF15897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15897_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 12161797 - 12161498
Alignment:
| Q |
13 |
aatatgataatttaaaaattgttgttcatgcaaaataatatacaatgttatattattatgcttgcatagataggatcatgtgcatgttaatgccaaattc |
112 |
Q |
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| T |
12161797 |
aatatgataattttaaaattgttgttcatgcaaaataatatacaatgttatattattatgcttgcatagataggatcatgtgcatgttaatgccaaattc |
12161698 |
T |
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| Q |
113 |
atgttataattagctagcaaaataaacgtgtctaaacctatatagtattaattagtggatgcttctcttgttctatctaaaatgtgacaattttggccta |
212 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12161697 |
atgttataattagctagcaaa-taaacgtgtctaaacctatatagtattaattagtggatgcttctcttgttctatctaaaatgtgacaattttggccta |
12161599 |
T |
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| Q |
213 |
agcatcttgaagccacatatctccaatttgtaatggagacaactttaattaattctggtgaagccaagttattggatatggtcttgtcaaatccataaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12161598 |
agcatcttgaagccacatatctccaatttgtaatggagacaactttaattaattctggtgaagccaagttattggatatggtcttgtcaaatccataaac |
12161499 |
T |
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