View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15897_low_7 (Length: 322)

Name: NF15897_low_7
Description: NF15897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15897_low_7
NF15897_low_7
[»] chr8 (1 HSPs)
chr8 (10-307)||(18109129-18109426)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 18109129 - 18109426
Alignment:
Q  10 tatacaataaagaataatctccatgacaagaaaactcatttaaccataatatctagactttcatataaatacacaaacaatgaaacatataactcaacaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18109129 tatataataaagaataatctccatgacaagaaaactcatttaaccataatatctagactttcatataaatacacaaacaatgaaacatataactcaacaa 18109228  T
Q  110 gtgtcataatcaaagcatttgtataactacaatttggtgaggcacaaatagtaatatttattttaaagttattatggctttcaattcacaacgtacattt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18109229 gtgtcataatcaaagcatttgtataactacaatttggtgaggcacaaatagtaatatttattctaaagttattatggctttcaattcacaacgtacattt 18109328  T
Q  210 agagcaccaactttccggtcacaactttcagttcgtcgtgtgtacgagactttgcagcctccatcagagatgaaagaaactcctgaagcgtaccttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18109329 agagcaccaactttccggtcacaactttcagttcgtcgtgtatacgagactttgcagcctccatcagagatgaaagaaactcctgaagcttaccttct 18109426  T

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