View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15898_high_4 (Length: 346)

Name: NF15898_high_4
Description: NF15898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15898_high_4
NF15898_high_4
[»] chr2 (1 HSPs)
chr2 (30-323)||(39293582-39293879)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 39293582 - 39293879
Alignment:
Q  30 ataatacatgtcaaacgtcgtataatttgagagggatgaagtaaaagattttaaggactggaacagagaaattgttgtgctgttagaaagagtcatag-g 128  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  39293582 ataatacatgtcaaacgtcatataatttgtgaggaatgaagtaaaagattttaaggactagaacagagaaattgttgtgctgttagaaagagtcatagtg 39293681  T
Q  129 agacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactcatatctttattatatcgatcta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39293682 agacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactcatatctttattatatcgatcta 39293781  T
Q  229 tttctcttttgac---tgactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgtaagagtttgtacattacttgttgatga 323  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  39293782 tttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgttagagtttgtacattacttgttaatga 39293879  T

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