View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15898_high_5 (Length: 337)
Name: NF15898_high_5
Description: NF15898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15898_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 105 - 337
Target Start/End: Original strand, 6089230 - 6089459
Alignment:
| Q |
105 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaagtggaactgaaccaccacttcctcctcctccttcaaccaaccct |
204 |
Q |
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| T |
6089230 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaatggaactgaaccaccacttcct---cctccttcaaccaaacct |
6089326 |
T |
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| Q |
205 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
304 |
Q |
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| T |
6089327 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
6089426 |
T |
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| Q |
305 |
aagacaaaggttcatgattattcaacatcatag |
337 |
Q |
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| T |
6089427 |
aagacaaaggttcatgattattcaacatcatag |
6089459 |
T |
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