View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15898_low_1 (Length: 393)
Name: NF15898_low_1
Description: NF15898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15898_low_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 6190885 - 6191277
Alignment:
| Q |
1 |
ttctctttgtcgcaaagcattaatgtgatcctcaaccacatttttagtcatgacaaagtttttggagaggttctgaataaaggatgtcattttctggaca |
100 |
Q |
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| T |
6190885 |
ttctctttttcgcaaagcattaatgtgatcctcaaccacatttttagtcatgacaaagtttttggaaaggttctgaataaaggatgtcattttctggaca |
6190984 |
T |
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| Q |
101 |
agcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatgg |
200 |
Q |
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| T |
6190985 |
agcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgttgtagctctacgtcatagagaatgg |
6191084 |
T |
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| Q |
201 |
actcaagtgaattttcaaataggcattcaaggttgtgcaaagcttctcttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctgg |
300 |
Q |
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| T |
6191085 |
actctagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggttacttttggcggagactctgg |
6191184 |
T |
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| Q |
301 |
acttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttctttact |
393 |
Q |
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| T |
6191185 |
acttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtgaattttctttact |
6191277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 6183892 - 6184231
Alignment:
| Q |
16 |
agcattaatgtgatcctcaaccacatttttagtcatgacaaagtttttggagaggttctgaataaaggatgtcattttctggacaagcttcacaacgttt |
115 |
Q |
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| T |
6183892 |
agcattaatgtgatcatcaaccacatttttagtcatgacaaagtcttcgaaaaggttctcaacagaggatgtcattttctggacaagcgtcacaacatta |
6183991 |
T |
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| Q |
116 |
ggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaagtgaatttt |
215 |
Q |
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| T |
6183992 |
ggagaaacgttttcatgagatgcttgttttatgtattcaaaagacatatgtaattgctgctgtagctcgacatcactgagaatggactcaagtgaatttt |
6184091 |
T |
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| Q |
216 |
caaataggcattcaaggttgtgcaaagcttctcttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttcccagcaggat |
315 |
Q |
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| T |
6184092 |
ttaataggctttcaaggttatgcaaggcttctcttacagcaa---catcgcttgtggaacaggttgcttttggcgaggactctggacttcccaacaggat |
6184188 |
T |
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| Q |
316 |
gctctcaagttcagcaaaagggtcctcatctgattcatcttca |
358 |
Q |
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| T |
6184189 |
gctatcaagttcagcaaaagggtcatcatctgatccatcttca |
6184231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6134975 - 6135072
Alignment:
| Q |
1 |
ttctctttgtcgcaaagcattaatgtgatcctcaaccacatttttagtcatgacaaagtttttggagaggttctgaataaaggatgtcattttctgga |
98 |
Q |
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| T |
6134975 |
ttctctttgccgtaaagcattcatgtgatcctcaaccacttttctagtcacgacaaagtcttcgaaaaggttctcaatataggatgtcattttctgga |
6135072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 37454720 - 37454364
Alignment:
| Q |
1 |
ttctctttgtcgcaaagcattaatgtgatcctcaaccacatttttagtcatgacaaagtttttggagaggttctgaataaaggatgtcattttctggaca |
100 |
Q |
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|||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||| |||||| |||||| ||||||||||||| |
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| T |
37454720 |
ttctcttttttgcaaagcattaatgtgatcctcaacagcatttttagtcatgacaaagtcatcgaaaaggttatgaatagaggatgccattttctggaca |
37454621 |
T |
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| Q |
101 |
agcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatgg |
200 |
Q |
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| T |
37454620 |
agcttcacaacatttggagaaactttttcatgggttgcttgttttatgcattccaaagacgtgcgtaactgtttttgtagctctacatcacagagaatgg |
37454521 |
T |
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| Q |
201 |
actcaagtgaattttcaaataggcattcaaggttgtgcaaagcttctcttacagcaacatcatcacttgtggaacaggttgcttttggcggagactctgg |
300 |
Q |
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| T |
37454520 |
actcaagtgatttttccaatagacattcaaggttatgcaaagcttctcttacagcaacatcatcgcttgtggaacaagttgcttttggcgaggactctgg |
37454421 |
T |
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| Q |
301 |
acttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttc |
357 |
Q |
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| T |
37454420 |
acttcccttcaggatcctctcaacttcagaaaaaatgtcctcgtcagatccatcttc |
37454364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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