View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15898_low_2 (Length: 224)
Name: NF15898_low_2
Description: NF15898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15898_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 4867439 - 4867583
Alignment:
| Q |
68 |
tggatggcaaaaagaatggcctgaataacctgaaatatgaaccttcttcagcgtcattgtcccaacttgttgcttttgggactccaaccaatgcgaccac |
167 |
Q |
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| T |
4867439 |
tggatggcaaaaagaatggcctgaataacctgaaatatgaaccttcttcagcatcattgtcccaacttgttgcttttggaactccaaccaatgcgaccac |
4867538 |
T |
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| Q |
168 |
tcaagggccttaatctgagtccttaggtgtcaatgagaataatct |
212 |
Q |
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| T |
4867539 |
tcacgggccttcatctgagtccttaggtgtcaatgagaataatct |
4867583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4867253 - 4867304
Alignment:
| Q |
18 |
attgttctcaaatgatagataatttatgttgattttttaaatgtgcaatgtg |
69 |
Q |
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| T |
4867253 |
attgttctcaaatgatagataatttatgtagattttttaaatgtgcaatgtg |
4867304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 3409952 - 3409901
Alignment:
| Q |
18 |
attgttctcaaatgatagataatttatgttgattttttaaatgtgcaatgtg |
69 |
Q |
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| T |
3409952 |
attgttttcaaatgataaacaatttatgttgatttttttaatgtacaatgtg |
3409901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4244684 - 4244724
Alignment:
| Q |
18 |
attgttctcaaatgatagataatttatgttgattttttaaa |
58 |
Q |
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| T |
4244684 |
attgttctcatatgataaacaatttatgttgattttttaaa |
4244724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 7159312 - 7159437
Alignment:
| Q |
86 |
gcctgaataacctgaaatatgaaccttcttcagcgtcattgtcccaacttgttgcttttgggactccaaccaatgcgaccactcaagggccttaatctga |
185 |
Q |
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| T |
7159312 |
gcctgaataacctggaatatgaattttcttcagcgccattgcctaaacttgttaatgatggaactcaaaccgatgtgaccactcaagggcattcatctca |
7159411 |
T |
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| Q |
186 |
gtccttaggtgtcaatgagaataatc |
211 |
Q |
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| T |
7159412 |
gtccttaggtgacaaagaaaataatc |
7159437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 7159117 - 7159156
Alignment:
| Q |
26 |
caaatgatagataatttatgttgattttttaaatgtgcaat |
66 |
Q |
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| T |
7159117 |
caaatgatagataattcatgttga-tttttaaatgtgcaat |
7159156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 14416732 - 14416676
Alignment:
| Q |
127 |
tcccaacttgttgcttttgggactccaaccaatgcgaccactcaagggccttaatct |
183 |
Q |
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| T |
14416732 |
tcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcatct |
14416676 |
T |
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