View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15899_high_6 (Length: 324)

Name: NF15899_high_6
Description: NF15899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15899_high_6
NF15899_high_6
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-263)||(194391-194630)
[»] chr4 (12 HSPs)
chr4 (186-267)||(41370160-41370241)
chr4 (150-234)||(39727579-39727663)
chr4 (168-262)||(41956427-41956522)
chr4 (175-251)||(42370321-42370398)
chr4 (153-285)||(50343810-50343943)
chr4 (154-240)||(50774961-50775048)
chr4 (186-254)||(36721591-36721659)
chr4 (174-217)||(28002461-28002504)
chr4 (170-207)||(37209359-37209396)
chr4 (168-217)||(45984086-45984135)
chr4 (186-238)||(21074481-21074533)
chr4 (186-238)||(44570125-44570177)
[»] chr3 (16 HSPs)
chr3 (134-251)||(38457225-38457344)
chr3 (185-284)||(47930113-47930212)
chr3 (185-290)||(302023-302128)
chr3 (171-266)||(1557728-1557824)
chr3 (174-234)||(31419229-31419288)
chr3 (153-224)||(43749509-43749581)
chr3 (174-248)||(53433197-53433272)
chr3 (170-238)||(51039771-51039840)
chr3 (153-245)||(28434510-28434602)
chr3 (174-224)||(11404726-11404777)
chr3 (185-224)||(45566117-45566156)
chr3 (186-238)||(28281054-28281107)
chr3 (154-262)||(38388712-38388821)
chr3 (186-247)||(40392425-40392486)
chr3 (153-224)||(39400312-39400384)
chr3 (206-254)||(48811373-48811421)
[»] chr5 (15 HSPs)
chr5 (153-234)||(8761926-8762008)
chr5 (174-290)||(24040993-24041109)
chr5 (153-221)||(39046935-39047003)
chr5 (186-267)||(42877277-42877358)
chr5 (155-224)||(12448672-12448742)
chr5 (170-230)||(5149818-5149879)
chr5 (154-224)||(22873471-22873542)
chr5 (168-238)||(26407533-26407604)
chr5 (175-260)||(779107-779192)
chr5 (153-261)||(5356296-5356405)
chr5 (177-222)||(11844267-11844312)
chr5 (174-269)||(14474990-14475086)
chr5 (154-261)||(33900215-33900323)
chr5 (153-224)||(35395187-35395259)
chr5 (153-240)||(36160318-36160406)
[»] chr1 (22 HSPs)
chr1 (171-261)||(11015834-11015925)
chr1 (170-252)||(1048677-1048759)
chr1 (153-219)||(37976827-37976893)
chr1 (174-224)||(5597736-5597787)
chr1 (186-268)||(14758592-14758674)
chr1 (186-268)||(40203069-40203151)
chr1 (153-254)||(45584538-45584640)
chr1 (186-246)||(26687572-26687632)
chr1 (173-268)||(26857182-26857278)
chr1 (153-268)||(46830123-46830239)
chr1 (194-254)||(50222612-50222672)
chr1 (174-209)||(29525097-29525132)
chr1 (185-240)||(33744154-33744209)
chr1 (186-244)||(17112739-17112797)
chr1 (186-244)||(17554891-17554949)
chr1 (153-253)||(5115612-5115713)
chr1 (153-285)||(13794161-13794292)
chr1 (155-268)||(34596111-34596223)
chr1 (186-246)||(2633064-2633124)
chr1 (173-252)||(5423753-5423833)
chr1 (153-224)||(25095608-25095680)
chr1 (153-224)||(28171517-28171589)
[»] chr6 (8 HSPs)
chr6 (186-283)||(13063857-13063954)
chr6 (174-268)||(31702731-31702826)
chr6 (185-251)||(13070513-13070579)
chr6 (185-251)||(13070650-13070716)
chr6 (171-234)||(30396265-30396328)
chr6 (185-290)||(23399142-23399248)
chr6 (187-251)||(12605996-12606060)
chr6 (169-212)||(13767276-13767320)
[»] chr2 (17 HSPs)
chr2 (153-264)||(8898794-8898908)
chr2 (186-267)||(5961955-5962036)
chr2 (186-267)||(14102291-14102372)
chr2 (186-268)||(2888941-2889023)
chr2 (154-251)||(35312103-35312201)
chr2 (194-263)||(42924413-42924482)
chr2 (173-252)||(13538415-13538495)
chr2 (194-262)||(25622574-25622642)
chr2 (154-253)||(36051954-36052053)
chr2 (154-240)||(8964392-8964479)
chr2 (174-224)||(4616859-4616909)
chr2 (174-267)||(33962935-33963029)
chr2 (194-251)||(2517252-2517309)
chr2 (194-247)||(6581589-6581642)
chr2 (168-208)||(45624402-45624443)
chr2 (186-238)||(2047814-2047866)
chr2 (183-250)||(31513782-31513850)
[»] chr8 (15 HSPs)
chr8 (153-252)||(39691121-39691221)
chr8 (174-250)||(7931734-7931812)
chr8 (168-251)||(34716516-34716599)
chr8 (188-262)||(27055945-27056019)
chr8 (198-268)||(33285916-33285986)
chr8 (153-269)||(17520993-17521110)
chr8 (153-262)||(10335019-10335130)
chr8 (226-290)||(23984327-23984391)
chr8 (168-247)||(32646833-32646912)
chr8 (186-251)||(22209439-22209504)
chr8 (226-290)||(11078133-11078197)
chr8 (168-212)||(13328364-13328408)
chr8 (192-224)||(28313572-28313604)
chr8 (175-211)||(32503397-32503433)
chr8 (185-213)||(35149563-35149591)
[»] chr7 (10 HSPs)
chr7 (168-267)||(31902741-31902841)
chr7 (185-267)||(10031913-10031995)
chr7 (153-246)||(33887866-33887959)
chr7 (183-285)||(35590978-35591079)
chr7 (183-224)||(30972333-30972374)
chr7 (174-251)||(18926347-18926425)
chr7 (153-234)||(220002-220083)
chr7 (206-267)||(3683475-3683535)
chr7 (186-238)||(2959595-2959647)
chr7 (194-266)||(46128010-46128082)
[»] scaffold0047 (1 HSPs)
scaffold0047 (175-220)||(63582-63627)


Alignment Details
Target: scaffold0007 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 194391 - 194630
Alignment:
Q  25 acacatctctaataacaaatgaattgcatatttgcatgaatgtgtgcaatgagagagccattaaaatcatgagagcnnnnnnntaattgataaagaatat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||| |||||||||||    
T  194391 acacatctctaataacaaatgaattgcatatttgcatgaatgtgtgaaatgagagagccattaaaatcatgagagcaaaaaaataattcataaagaatat 194490  T
Q  125 gggacatgctaacgagtgctgcagaaca--ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgatta 222  Q
      | ||||||||||||||   || ||||  |||||||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||| ||||||| |    
T  194491 -tgtcatgctaacgagtgtcccaaaacactctttaaggattctataataagaaattattctataaaaagtaaaatatttcaatatttaatttattgatca 194589  T
Q  223 cagaatttttcataaatagttactatttaaagaccttaaaa 263  Q
    || |||||||||||||| |||||||| ||||| ||||||||    
T  194590 cacaatttttcataaattgttactatataaaggccttaaaa 194630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 41370241 - 41370160
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    |||||||||||||||| ||||||||||| |||||||||| || |||||||||| | |||||||| |||| ||||||||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtg 41370160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 39727663 - 39727579
Alignment:
Q  150 acactttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 234  Q
    ||||||||||||||||| || || ||||||||||||||||||| |||||||| |||||   ||| |||||||||| || ||||||    
T  39727663 acactttaaggattctaaaagaataaattattctataaaaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 41956522 - 41956427
Alignment:
Q  168 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 262  Q
    ||||| ||| |||||| ||| ||| |||||||||| ||||||||| | |||||||||| ||||||||||||| | |||||||| |||| |||||||    
T  41956522 aataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattacacaatttttcataaaaatttactattaaaagcccttaaa 41956427  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 42370398 - 42370321
Alignment:
Q  175 aattattctataaaaagttaaatattttaattttcaatgtattgattaca-gaatttttcataaatagttactattta 251  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||| | |||||| ||||||| || |||||||    
T  42370398 aattattctttaaaaagtaaaatattttaattttcaatgcattaattacatgcattttttataaatacttgctattta 42370321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 50343943 - 50343810
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||| ||| || |||||  ||||||||| |||||| || ||||||||||||||||||||||||||||| |    |||||||||||  |||||| |||    
T  50343943 ctttaagcattttaaaataagtaattattctttaaaaaagtcaaatattttaattttcaatgtattgattatatgtattttcataaattcttactactta 50343844  T
Q  252 aagaccttaaaaagtgtttctaagacactcgtta 285  Q
      | |||||||||||||  | |||||||| ||||    
T  50343843 cggtccttaaaaagtgtcacaaagacacttgtta 50343810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 50774961 - 50775048
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttcataaata 240  Q
    |||||| |||||| |||||  ||||||||| ||||| ||||||||||||| ||||||||  ||||||||||| |  ||||||||||||    
T  50774961 tttaagtattctaaaataagtaattattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaata 50775048  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 36721659 - 36721591
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 254  Q
    ||||||| |||||||| |||| |||||| |||||||||| || ||| |||||| | |||||||||||||    
T  36721659 aaaaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 28002504 - 28002461
Alignment:
Q  174 aaattattctataaaaagttaaatattttaattttcaatgtatt 217  Q
    |||||||||  ||||||||||||||||||||||||||| |||||    
T  28002504 aaattattccttaaaaagttaaatattttaattttcaacgtatt 28002461  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 37209359 - 37209396
Alignment:
Q  170 taaaaaattattctataaaaagttaaatattttaattt 207  Q
    |||||||||||||| | |||||||||||||||||||||    
T  37209359 taaaaaattattctctcaaaagttaaatattttaattt 37209396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 45984135 - 45984086
Alignment:
Q  168 aataaaaaattattctataaaaagttaaatattttaattttcaatgtatt 217  Q
    |||||| ||||||||| |||||| ||||||||||| |||| |||||||||    
T  45984135 aataaataattattctttaaaaaattaaatattttgatttccaatgtatt 45984086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 21074533 - 21074481
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    ||||||| |||||||| ||||||||||||| ||| |||| ||||||| |||||    
T  21074533 aaaaagtcaaatatttcaattttcaatgtactgaatacacaattttttataaa 21074481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 44570177 - 44570125
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||  |||||||||    
T  44570177 aaaatgttaaattttttaattttcaatgcattgattacacaaactttcataaa 44570125  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 38457344 - 38457225
Alignment:
Q  134 taacgagtgctgcagaaca--ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttt 231  Q
    ||||||||||| ||| |||  ||||||| ||||||||||||  ||||||||| |||||| ||||||||||| |||||||||| ||||||||||    |||    
T  38457344 taacgagtgctccaggacattctttaagcattctataataagcaattattctttaaaaaattaaatattttgattttcaatgcattgattacatgtattt 38457245  T
Q  232 tcataaatagttactattta 251  Q
    || |||||| ||||||||||    
T  38457244 tcgtaaatacttactattta 38457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 47930113 - 47930212
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgtt 284  Q
    ||||||||||||||||||||||||||||  ||| | |||| || |||||||||| | |||| | | |||  |||||||||||||||| | ||||||||||    
T  47930113 taaaaagttaaatattttaattttcaatacattaaatacacaaattttcataaaaatttaccaatcaaatcccttaaaaagtgtttcgatgacactcgtt 47930212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 302128 - 302023
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgtt 284  Q
    |||||||| |||||||||||||||||||  | |  ||||| || || |||||||   |||| ||||||||| |||||||||||||||  |||||||||||    
T  302128 taaaaagtcaaatattttaattttcaatacaatagttacacaaattgtcataaaagattaccatttaaagatcttaaaaagtgtttcggagacactcgtt 302029  T
Q  285 agcatt 290  Q
    | ||||    
T  302028 aacatt 302023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 1557824 - 1557728
Alignment:
Q  171 aaaaaattattctataaaaag-ttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 266  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||| ||||||||||| |  |||| ||||| | |||  ||||||||| ||||||||||    
T  1557824 aaaaaattattttataaaaaaattaaatattttaatttttaatatattgattacatatatttttataaaaaattatcatttaaagatcttaaaaagt 1557728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 31419229 - 31419288
Alignment:
Q  174 aaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 234  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||| || ||||||    
T  31419229 aaattattccataaaaa-ttaaatatttaaattttcaatgtattgattacataaattttca 31419288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 43749581 - 43749509
Alignment:
Q  153 ctttaaggattctataataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||||||||| || || |||||||||||| ||||||| |||||||| ||||||| || |||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattaca 43749509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 53433272 - 53433197
Alignment:
Q  174 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactat 248  Q
    ||||||||||||||||| || |||||||||||||||| ||| |||||||||| || |||||| | | |||||||||    
T  53433272 aaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttcaaagaaagttactat 53433197  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 51039771 - 51039840
Alignment:
Q  170 taaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    ||||||||||||||||||||| || ||||| || ||||||||||| ||||| |||| || ||||||||||    
T  51039771 taaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaa 51039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 28434510 - 28434602
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttac 245  Q
    ||||||||||| ||  | || ||||||||  ||||||||| ||||||||| |||||| ||| |||||||||| || |||||| ||| ||||||    
T  28434510 ctttaaggattttaagagaataaattatttcataaaaagtcaaatattttgattttcgatgcattgattacataaattttcaaaaaaagttac 28434602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 11404726 - 11404777
Alignment:
Q  174 aaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||    
T  11404726 aaattattttataaaaaagttaaatattttaatttttaatgtattaattaca 11404777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 45566156 - 45566117
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattaca 224  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  45566156 taaaaagttaaatatttcaattttcaatgtatttattaca 45566117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 28281107 - 28281054
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacaga-atttttcataaa 238  Q
    ||||||| ||||||||||||||| |||||||| |||||| | ||||||||||||    
T  28281107 aaaaagtcaaatattttaatttttaatgtattaattacacatatttttcataaa 28281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 38388712 - 38388821
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 252  Q
    ||||| ||||||| || || |||||| | |||||||| || ||||||||| ||||||| || |||||||||| |  |||| ||||| | |||||||||||    
T  38388712 tttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatatttttataaaaatttactatttaa 38388811  T
Q  253 agaccttaaa 262  Q
    | | ||||||    
T  38388812 aaaacttaaa 38388821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 40392425 - 40392486
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 247  Q
    ||||||||||||||||| ||||  |||| |||||||||| |  |||||||||||| ||||||    
T  40392425 aaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttacta 40392486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 39400384 - 39400312
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaa-aagttaaatattttaattttcaatgtattgattaca 224  Q
    ||||||| || ||| |||||  ||||||||| |||| |||||||| |||||||||||||||| ||| ||||||    
T  39400384 ctttaagtatactaaaataattaattattctttaaacaagttaaacattttaattttcaatgcattaattaca 39400312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 48811421 - 48811373
Alignment:
Q  206 tttcaatgtattgattacagaatttttcataaatagttactatttaaag 254  Q
    |||||||| |||||||||| ||||||||||||| | |||||||| ||||    
T  48811421 tttcaatgcattgattacacaatttttcataaaaacttactattaaaag 48811373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 8761926 - 8762008
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttca 234  Q
    |||||||||||||| || || |||||||||||||||| |||||||||||| |||||||||||||||||| ||| || ||||||    
T  8761926 ctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgtattgatgacataaattttca 8762008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 24041109 - 24040993
Alignment:
Q  174 aaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttct 272  Q
    |||||||||| |||||| || ||||| |||||||| ||||  ||| | |||| || |||||||||| |||||||||||||   |||||||||||| |||     
T  24041109 aaattattctttaaaaaattcaaatagtttaatttccaatacattaaatacataacttttcataaaaagttactatttaagacccttaaaaagtg-ttca 24041011  T
Q  273 aagacactcgttagcatt 290  Q
    ||||||||||||| ||||    
T  24041010 aagacactcgttaacatt 24040993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 39046935 - 39047003
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgatt 221  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||| | |||||||||||||| |||||||    
T  39046935 ctttaaggattct-taataaaaaattattctttaaaaacgttaaaaactttaattttcaatgcattgatt 39047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 42877277 - 42877358
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    |||||||| || |||| ||||||||||||||||| |||| |||||| |||||| | ||||||||||||| | ||||| ||||    
T  42877277 aaaaagtttaaaatttcaattttcaatgtattgaatacacaattttccataaaaatttactatttaaagtctttaaagagtg 42877358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 12448672 - 12448742
Alignment:
Q  155 ttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 224  Q
    ||||||||| || ||||| ||||||||| |||||| |||||||||||| ||||||||||| | ||||||||    
T  12448672 ttaaggattttaaaataagaaattattcaataaaaaagttaaatatttcaattttcaatgcaatgattaca 12448742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 5149818 - 5149879
Alignment:
Q  170 taaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaattt 230  Q
    ||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||| |||||    
T  5149818 taaaaaattgttctttaaaaatgttaaatattttaattttcaatatattaattacacaattt 5149879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 22873471 - 22873542
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 224  Q
    |||||| ||| || |||||| ||||||||| ||||| ||||||||||||||||||| |||| ||||| ||||    
T  22873471 tttaagtattttaaaataaagaattattctttaaaaaagttaaatattttaatttttaatgcattgaataca 22873542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 26407604 - 26407533
Alignment:
Q  168 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    |||||||||||||||| ||| ||| |||||||||| ||||||||||| ||| |||| | || ||||||||||    
T  26407604 aataaaaaattattctttaataaaattaaatatttcaattttcaatgaattaattatataaattttcataaa 26407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 779107 - 779192
Alignment:
Q  175 aattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagacctta 260  Q
    ||||||| | ||||||||||||| |||  |||| ||||| |||||||||| | |||||| ||||||  ||||||||| || |||||    
T  779107 aattattttttaaaaagttaaatgtttcgatttccaatgcattgattacacactttttcgtaaatacatactatttatagtcctta 779192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 5356405 - 5356296
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||||| | | ||||| |||||| | |||||||| || ||||||||  |||||| ||| |||||||||| |  ||||||| |  |||||| |||||    
T  5356405 ctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattta 5356306  T
Q  252 aagaccttaa 261  Q
    ||||||||||    
T  5356305 aagaccttaa 5356296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 11844267 - 11844312
Alignment:
Q  177 ttattctataaaaagttaaatattttaattttcaatgtattgatta 222  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||||    
T  11844267 ttattctttaaaaagttaaatattttaatttccaatacattgatta 11844312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 14475086 - 14474990
Alignment:
Q  174 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtt 269  Q
    ||||||||||||||||| || |||||||| |||||   |||  ||||||||| || |||||| ||| ||||||||||| |||  |||||| ||||||    
T  14475086 aaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacataaattttcaaaaaaagttactatttgaaggtcttaaagagtgtt 14474990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 33900215 - 33900323
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttt-tcataaatagttactatttaa 252  Q
    |||||| ||| || |||||| ||| ||| | |||||||| |||||||| ||||  ||||| ||| |||||| | |||| ||||||||||||||| ||||     
T  33900215 tttaagcattttaaaataaacaataattttttaaaaagtcaaatatttcaattcccaatgcattaattacatatttttttcataaatagttactctttat 33900314  T
Q  253 agaccttaa 261  Q
    || ||||||    
T  33900315 agtccttaa 33900323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 35395187 - 35395259
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||||||| | || || ||| |||| |||||||| || |||||||||||||||| ||| ||||||||||    
T  35395187 ctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattaca 35395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 36160318 - 36160406
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaata 240  Q
    ||||||| |||||| |||||  ||||||| | |||||| || |||| |||| ||||||||| |||| ||||||  ||||||||||||||    
T  36160318 ctttaagcattctaaaataagcaattattttttaaaaaagtcaaatgttttgattttcaatatattaattacacgatttttcataaata 36160406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 11015834 - 11015925
Alignment:
Q  171 aaaaaattattctata-aaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaa 261  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| |||| ||||||||  |||| ||||| | |||||||||||||| |||||    
T  11015834 aaaaaattattttatataaaaattaaatattttaattttcaatctatttattacagatatttttataaaaatttactatttaaagatcttaa 11015925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 1048759 - 1048677
Alignment:
Q  170 taaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 252  Q
    |||||||||||||| |||||||||||||| || |||||||||||  |||| | || ||||||||||||| || || |||||||    
T  1048759 taaaaaattattctttaaaaagttaaatagttcaattttcaatgcgttgaatgcataatttttcataaaaagatattatttaa 1048677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 37976827 - 37976893
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattga 219  Q
    ||||||| |||||| ||||||||||||| || |||||||| ||||||||| ||||||||||| ||||    
T  37976827 ctttaagcattctaaaataaaaaattatactttaaaaagtcaaatattttgattttcaatgttttga 37976893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 5597736 - 5597787
Alignment:
Q  174 aaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  5597736 aaattattctataaaaaagttaaatattttaatttttaatatattgattaca 5597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 14758592 - 14758674
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    |||||||| || |||| ||||||| ||| ||||| | || ||||||||||||| | ||||||||||||| ||||||| |||||    
T  14758592 aaaaagtttaacatttcaattttcgatgcattgaatgcacaatttttcataaaaatttactatttaaagtccttaaagagtgt 14758674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 40203151 - 40203069
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    ||||||| |||||||| ||||| ||||| |||||||||| |  |||||| | | |||||| |||||||||||||||| |||||    
T  40203151 aaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttaccatttaaagaccttaaagagtgt 40203069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 45584538 - 45584640
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||||||| | || || |||||||| ||||||| ||||||||||||||||||   |||||||||||||| |  ||||||| |  ||||||| ||||    
T  45584538 ctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgattacacatattttcatgataagttacttttta 45584637  T
Q  252 aag 254  Q
    |||    
T  45584638 aag 45584640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 26687572 - 26687632
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 246  Q
    ||||||| ||||||||  |||||||||| ||| |||||| | |||||||||||||||||||    
T  26687572 aaaaagtcaaatatttcgattttcaatgcattaattacacactttttcataaatagttact 26687632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 26857278 - 26857182
Alignment:
Q  173 aaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||||| || | ||  | ||||||| | |||||||||||   |||||||||||||    
T  26857278 aaaattattctttaaaaaagttaaatagtttaattttcaatgcattgaatatacaaaatctcataaaaaattactatttaagacccttaaaaagtgt 26857182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 46830239 - 46830123
Alignment:
Q  153 ctttaaggattctataataaaaaattattct-ataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||| ||| || |||||| ||||||| | | |||||||||||| ||||||||||||  | ||||||||||   ||||||||||||| |||||| |||    
T  46830239 ctttaagcattataaaataaacaattatttttaaaaaaagttaaatgttttaattttcaccgcattgattacacgttttttcataaatacttactactta 46830140  T
Q  252 aagaccttaaaaagtgt 268  Q
     || | ||||| |||||    
T  46830139 tagtctttaaagagtgt 46830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 50222672 - 50222612
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 254  Q
    |||||||||||||||||||| ||||||||||    |||||||||| | |||||||||||||    
T  50222672 aaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaag 50222612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 29525132 - 29525097
Alignment:
Q  174 aaattattctataaaaagttaaatattttaattttc 209  Q
    |||||||||| |||||||||||||||||||||||||    
T  29525132 aaattattctttaaaaagttaaatattttaattttc 29525097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 33744209 - 33744154
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaata 240  Q
    |||||||| ||||||||  |||||||||| |||||||||| | |||||||||||||    
T  33744209 taaaaagtcaaatatttcgattttcaatgcattgattacatattttttcataaata 33744154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 17112739 - 17112797
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagtta 244  Q
    ||||||| ||||||||| |||| ||||| |||||||||| |  ||||||||||||||||    
T  17112739 aaaaagtcaaatattttgatttccaatgcattgattacatatattttcataaatagtta 17112797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 17554891 - 17554949
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagtta 244  Q
    |||||||||||| ||| ||||| ||||| |||||||| | | |||||||||||||||||    
T  17554891 aaaaagttaaatgtttcaatttacaatgcattgattatatattttttcataaatagtta 17554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 5115713 - 5115612
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||||||||| || || |||||||  |||||||| ||||||||||| ||||| ||||| ||| |||||| || ||| || ||| | |||| |||||    
T  5115713 ctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaatttacaaaaaaatttaccattta 5115614  T
Q  252 aa 253  Q
    ||    
T  5115613 aa 5115612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 13794292 - 13794161
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||||||| || |||||||||||||| ||||| |||  |||||| ||||||||| |||||||| |||| | || |||| ||||| | |||  |||||    
T  13794292 ctttaaggatttta-aataaaaaattattttataagaaaaataaatagtttaatttttaatgtatttattatacaaatttttataaaga-ttatcattta 13794195  T
Q  252 aagaccttaaaaagtgtttctaagacactcgtta 285  Q
    ||||   |||||| |||||| |||| ||||||||    
T  13794194 aagattataaaaaatgtttcaaagagactcgtta 13794161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 34596223 - 34596111
Alignment:
Q  155 ttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 254  Q
    |||||||||||| || || |||||||| ||| |||| | ||||||||  |||||||||| |||||||||| |   ||||||||| |||||  ||||||||    
T  34596223 ttaaggattctaaaagaagaaattattttat-aaaattcaaatatttcgattttcaatgcattgattacacataatttcataaaaagttatcatttaaag 34596125  T
Q  255 accttaaaaagtgt 268  Q
      |||||| |||||    
T  34596124 gtcttaaagagtgt 34596111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 2633064 - 2633124
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 246  Q
    |||||||||||| |||  |||| |||| ||||||||| | | |||||||||||||||||||    
T  2633064 aaaaagttaaatgtttcgatttccaatatattgattatacactttttcataaatagttact 2633124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 5423833 - 5423753
Alignment:
Q  173 aaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 252  Q
    ||||||||||| |||||| |||||||| || ||||||||||| ||| | |||| || |||||||||| | |||| ||||||    
T  5423833 aaaattattctttaaaaaagttaaatagttcaattttcaatgcattaaatacataagttttcataaaaaattaccatttaa 5423753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 25095608 - 25095680
Alignment:
Q  153 ctttaaggattctataataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||||||||| || || ||||||||  || ||||||| |||||||| ||||||| ||| ||||||||||    
T  25095608 ctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgattaca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 28171589 - 28171517
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattaca 224  Q
    ||||||| |||| | || ||||||||||| |||||||| ||||||||||| |||||| |||| ||| ||||||    
T  28171589 ctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 13063954 - 13063857
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgt 283  Q
    ||||||| |||| || | |||| ||||  |||||||||| | |||||||||||||||||||||||| || ||||||| ||||| || |||||||||||    
T  13063954 aaaaagtcaaatgttgtgatttccaatacattgattacacactttttcataaatagttactatttatagtccttaaagagtgtctcgaagacactcgt 13063857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 31702826 - 31702731
Alignment:
Q  174 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    |||||||| |||||||| ||||| |||||||||||  |||| |||||||||| |  |||| ||||| ||||||||||||| || |||||| |||||    
T  31702826 aaattattttataaaaaagttaagtattttaatttctaatgcattgattacacatatttttataaaaagttactatttaaggatcttaaagagtgt 31702731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 13070579 - 13070513
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||||||||| || | |||| ||||  |||||||||| | ||||||||||||||||||||||||    
T  13070579 taaaaagttaaatgttgtgatttccaatacattgattacacattttttcataaatagttactattta 13070513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 13070716 - 13070650
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||||||||| || | |||| ||||  |||||||||| | ||||||||||||||||||||||||    
T  13070716 taaaaagttaaatgttgtgatttccaatacattgattacatattttttcataaatagttactattta 13070650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 30396265 - 30396328
Alignment:
Q  171 aaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 234  Q
    ||||||||||| |||||||| | |||||||  ||||||||||| |||||||||| || ||||||    
T  30396265 aaaaaattattttataaaaaatcaaatattacaattttcaatgcattgattacataaattttca 30396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 23399142 - 23399248
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcata-aatagttactatttaaagaccttaaaaagtgtttctaagacactcgt 283  Q
    ||||||||||| |||| ||||||||||||||||  || || || |||| ||| || | ||| |||||||||  |||||| ||||||||  ||||||||||    
T  23399142 taaaaagttaactattataattttcaatgtattcgttgcataacttttaatataaaacttaatatttaaagtacttaaagagtgtttcggagacactcgt 23399241  T
Q  284 tagcatt 290  Q
    || ||||    
T  23399242 taacatt 23399248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 12606060 - 12605996
Alignment:
Q  187 aaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||| ||||||||  |||||||||| |||||||| |   ||||||||||||| ||||||||||    
T  12606060 aaaagtaaaatatttggattttcaatgcattgattatacgctttttcataaatacttactattta 12605996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 13767276 - 13767320
Alignment:
Q  169 ataaaaaattattctataaaaag-ttaaatattttaattttcaat 212  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||    
T  13767276 ataaaaaattattctctaaaatggttaaatattttaattttcaat 13767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 264
Target Start/End: Complemental strand, 8898908 - 8898794
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataa-aaagttaaatat--tttaattttcaatgtattgattacagaatttttcataaatagttactatt 249  Q
    |||||| ||||||| ||||| |||||||| ||||| ||||| ||||||  |||||||||||| |||||||||| | ||  ||||||||| |||||  |||    
T  8898908 ctttaatgattctaaaataagaaattattttataataaagtcaaatatattttaattttcaaagtattgattatacaaagtttcataaacagttataatt 8898809  T
Q  250 taaagaccttaaaaa 264  Q
    |||||| ||||||||    
T  8898808 taaagatcttaaaaa 8898794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 5962036 - 5961955
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    ||||| |||||||||| ||||| ||||| |||||||||| || |||||| ||| |||||||||||||||  |||||| ||||    
T  5962036 aaaaaattaaatatttcaatttccaatgcattgattacataaattttcaaaaacagttactatttaaaggtcttaaatagtg 5961955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 14102372 - 14102291
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    ||||||||||||||||  |||| ||||  |||||||||| | |||||||||||||||||||| ||| || ||||||| ||||    
T  14102372 aaaaagttaaatatttcgatttccaatacattgattacacactttttcataaatagttactacttatagtccttaaagagtg 14102291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 2888941 - 2889023
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    ||||||||||||||||  |||| ||||||||||| |||| | |||||||||||||  ||||| ||| || ||||||| |||||    
T  2888941 aaaaagttaaatatttcgatttccaatgtattgactacacactttttcataaatacatactacttatagtccttaaagagtgt 2889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 35312103 - 35312201
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaaag-ttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||| |||||| |||||| || | |||| ||||||  |||||||||||||||| ||||||||| |||||| |  |||| ||||||| ||||||||||    
T  35312103 tttaagcattctaaaataaacaaattttctttaaaaaaattaaatattttaatttacaatgtattcattacatacatttttataaatatttactattta 35312201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 42924482 - 42924413
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaa 263  Q
    |||||||| ||||||||| ||||||||||||    |||||||||||| ||||||||||  ||||||||||    
T  42924482 aaatatttcaattttcaacgtattgattacatgcattttcataaatatttactatttatggaccttaaaa 42924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 13538415 - 13538495
Alignment:
Q  173 aaaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 252  Q
    ||||||||||| |||||| || ||||| || ||||| ||||| ||||| |||| || |||||||||| |||||||||||||    
T  13538415 aaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataaaaagttactatttaa 13538495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 25622574 - 25622642
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 262  Q
    |||||||  ||||||||||| ||| |||||| | ||||||||||||| |||||| ||| ||||||||||    
T  25622574 aaatattacaattttcaatgcattaattacatattttttcataaatatttactacttatagaccttaaa 25622642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 36051954 - 36052053
Alignment:
Q  154 tttaaggattctataataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 252  Q
    ||||| ||||||| ||||| ||||||| | |||| ||| | ||||||||||||||| |||| |||||||| | || |||| |||||||||||| ||||||    
T  36051954 tttaaagattctaaaataagaaattat-caataagaaaatcaaatattttaatttttaatgcattgattatacaaatttttataaatagttacaatttaa 36052052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 8964392 - 8964479
Alignment:
Q  154 tttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaata 240  Q
    |||||| |||||| | |||  ||||||||| |||||| || |||||||| ||||| ||||| |||||||||| || ||||||||||||    
T  8964392 tttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaata 8964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 4616859 - 4616909
Alignment:
Q  174 aaattattctataaaaagttaaatattttaattttcaatgtattgattaca 224  Q
    ||||||||  |||||||||||||||||  ||||||||||| ||||||||||    
T  4616859 aaattatttcataaaaagttaaatattacaattttcaatgcattgattaca 4616909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 33963029 - 33962935
Alignment:
Q  174 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    |||||||||| |||||| ||| || | || ||||||||||| ||||| | || ||||||||||||| | ||| ||||||||| ||||||| ||||    
T  33963029 aaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtccttaaagagtg 33962935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 2517309 - 2517252
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||| ||||||||||| ||||||||||    |||||||||||| ||||||||||    
T  2517309 aaatatttcaattttcaatgcattgattacacgtattttcataaatacttactattta 2517252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 6581589 - 6581642
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 247  Q
    |||| |||| ||| |||||| |||||||||| | ||||||||||||||||||||    
T  6581589 aaatgttttgattctcaatgcattgattacacactttttcataaatagttacta 6581642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 45624402 - 45624443
Alignment:
Q  168 aataaaaaattattctataaaa-agttaaatattttaatttt 208  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  45624402 aataaaaaattattttataaaaaagttaaatattttaatttt 45624443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 2047814 - 2047866
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    ||||| ||||||||||||||||| |||||||||||| || || || |||||||    
T  2047814 aaaaaattaaatattttaatttttaatgtattgattgcacaaattatcataaa 2047866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 31513782 - 31513850
Alignment:
Q  183 tataaaaagttaaatattttaattttcaatgtattgattacagaatttt-tcataaatagttactattt 250  Q
    |||||||| |||||| |||  |||| ||||| |||||||||| | |||| |||||||||||||||||||    
T  31513782 tataaaaatttaaatgtttcgatttccaatgcattgattacacatttttttcataaatagttactattt 31513850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 39691221 - 39691121
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||| |||| | | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| |||| || |||||||||| | ||||||||||    
T  39691221 ctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattactattta 39691122  T
Q  252 a 252  Q
    |    
T  39691121 a 39691121  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 7931734 - 7931812
Alignment:
Q  174 aaattattctataaaaa--gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattt 250  Q
    ||||||||| |||||||  || ||||||| ||||||||||||||||||||||| || |||||| ||| |||||| ||||    
T  7931734 aaattattcaataaaaaaggtcaaatattataattttcaatgtattgattacacaaattttcaaaaaaagttaccattt 7931812  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 34716599 - 34716516
Alignment:
Q  168 aataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||| ||||||||| |||||  |||||||||||| |||| |||| ||||||||||    |||||||||||| ||||||||||    
T  34716599 aataaataattattctttaaaatattaaatattttagtttttaatgaattgattacatgcattttcataaatacttactattta 34716516  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 27055945 - 27056019
Alignment:
Q  188 aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 262  Q
    |||||||||| |||  |||| |||||||||||||||| | ||||||||||||| |||||| ||| || |||||||    
T  27055945 aaagttaaatgtttcgatttccaatgtattgattacacattttttcataaataattactacttatagtccttaaa 27056019  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 33285986 - 33285916
Alignment:
Q  198 attttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 268  Q
    |||| ||||||| ||||||| | |||| ||||||||||||| | ||||||||||||| |||||||| ||||    
T  33285986 atttcaattttcgatgtattaaatacacaatttttcataaaaatttactatttaaagtccttaaaacgtgt 33285916  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 17521110 - 17520993
Alignment:
Q  153 ctttaaggattctataataaaaaatta-ttctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||||||||| || ||||||  | || || ||||||||||||||||   ||| |||||||||||||||| |    || ||||| ||||||||||||    
T  17521110 ctttaaggattctaaaaaaaaaaaaaaattataaaaaaagttaaatatttcgttttccaatgtattgattacacatacatttataaaaagttactattta 17521011  T
Q  252 aagaccttaaaaagtgtt 269  Q
    |||  |||||||||||||    
T  17521010 aaggtcttaaaaagtgtt 17520993  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 10335130 - 10335019
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa--gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattt 250  Q
    ||||||| |||| | || || |||||||||||||||||  || ||||||| |||||||||||| ||| |||| | || |||||| ||| | |||| ||||    
T  10335130 ctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaattatacaaattttcacaaaaaattacaattt 10335031  T
Q  251 aaagaccttaaa 262  Q
    |||| |||||||    
T  10335030 aaaggccttaaa 10335019  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 23984327 - 23984391
Alignment:
Q  226 aatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgttagcatt 290  Q
    ||||||||||||| | ||||||||||||  ||||||  ||||||  |||||||||||||||||||    
T  23984327 aatttttcataaaaatttactatttaaaatccttaaggagtgttcttaagacactcgttagcatt 23984391  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 32646833 - 32646912
Alignment:
Q  168 aataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 247  Q
    |||||| ||||||||| | ||||||| ||||||||||||||| |||| ||||||||||  || ||||||||||| ||||||    
T  32646833 aataaacaattattcttttaaaaagtcaaatattttaatttttaatgcattgattaca-tatatttcataaatacttacta 32646912  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 22209439 - 22209504
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    ||||||||||||||||| |||| |||   |||||||||| |  |||||||||||| ||||||||||    
T  22209439 aaaaagttaaatattttgatttccaagacattgattacatatattttcataaatacttactattta 22209504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 11078133 - 11078197
Alignment:
Q  226 aatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgttagcatt 290  Q
    ||||||||||||| | |||||||||| ||  ||||||||||||   || ||||||||||||||||    
T  11078133 aatttttcataaaaatttactatttagagttcttaaaaagtgtcattacgacactcgttagcatt 11078197  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 13328408 - 13328364
Alignment:
Q  168 aataaaaaattattctataaaaagttaaatattttaattttcaat 212  Q
    |||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  13328408 aataaacaattattctttaaaatgttaaatatttcaattttcaat 13328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 28313604 - 28313572
Alignment:
Q  192 ttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||||| ||||||||||||||||||||||    
T  28313604 ttaaatatttcaattttcaatgtattgattaca 28313572  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 32503397 - 32503433
Alignment:
Q  175 aattattctataaaaagttaaatattttaattttcaa 211  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  32503397 aattattctattaaaagtaaaatattttaattttcaa 32503433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 35149563 - 35149591
Alignment:
Q  185 taaaaagttaaatattttaattttcaatg 213  Q
    |||||||||||||||||||||||||||||    
T  35149563 taaaaagttaaatattttaattttcaatg 35149591  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 31902841 - 31902741
Alignment:
Q  168 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 266  Q
    ||||| |||||||||  ||| ||||| |||||||| ||||||||||  ||||| |||| |||||| |||||| | ||||||||||||| ||||||| |||    
T  31902841 aataagaaattattccttaagaaagtcaaatatttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtccttaaagagt 31902742  T
Q  267 g 267  Q
    |    
T  31902741 g 31902741  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 10031995 - 10031913
Alignment:
Q  185 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    ||||||||||||| |||  |||| ||||| |||||||||| | |||||||||||||  ||||||||| || ||||||| ||||    
T  10031995 taaaaagttaaatgtttcgatttccaatgcattgattacacactttttcataaatacatactatttatagtccttaaagagtg 10031913  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 33887959 - 33887866
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 246  Q
    ||||||| |||| | |||||| ||||||||| |||||| || |||||||| ||||||||||| ||||||||||  | |||||||||||| |||||    
T  33887959 ctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacatta-ttttcataaatacttact 33887866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 35590978 - 35591079
Alignment:
Q  183 tataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcg 282  Q
    ||||||||||| |||||||||||||| |||||||| |||| | | |||||| || ||| |||| |||||    ||||||||||||||| | |||||||||    
T  35590978 tataaaaagtttaatattttaatttttaatgtattaattatacattttttcgtagatacttaccatttatgatccttaaaaagtgttt-tgagacactcg 35591076  T
Q  283 tta 285  Q
    |||    
T  35591077 tta 35591079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 30972333 - 30972374
Alignment:
Q  183 tataaaaagttaaatattttaattttcaatgtattgattaca 224  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  30972333 tataaaaaattaaatattttaattttcaatgaattgattaca 30972374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 18926347 - 18926425
Alignment:
Q  174 aaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 251  Q
    |||||||||| ||||||| | ||||| || ||||||||||| ||||| |||| || |||||||||| |||||| |||||    
T  18926347 aaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaacttttcataaaaagttaccattta 18926425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 220002 - 220083
Alignment:
Q  153 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 234  Q
    |||||||||||| | || || |||||| |  |||||||||||||| ||| || ||||||| ||||||||||| || ||||||    
T  220002 ctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattacacaaattttca 220083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 3683475 - 3683535
Alignment:
Q  206 tttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 267  Q
    |||| ||| ||||| |||| || |||||||||| ||||||||||| ||||||||||||||||    
T  3683475 tttccatgcattgaatacataacttttcataaaaagttactattt-aagaccttaaaaagtg 3683535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 2959647 - 2959595
Alignment:
Q  186 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 238  Q
    |||||||||||| || ||| ||| |||| |||||||||| |||||||||||||    
T  2959647 aaaaagttaaatgttataaattttaatgcattgattacataatttttcataaa 2959595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 46128082 - 46128010
Alignment:
Q  194 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 266  Q
    |||| ||| ||||||||||| ||||||| || | ||||||||||||| || ||||||| |  |||||||||||    
T  46128082 aaatgtttcaattttcaatggattgattgcacattttttcataaatacttgctatttataatccttaaaaagt 46128010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 63582 - 63627
Alignment:
Q  175 aattattctataaaaagttaaatattttaattttcaatgtattgat 220  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  63582 aattattctttaaaaagtcaaatattttaattttcaatgcattgat 63627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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