View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15899_high_7 (Length: 308)

Name: NF15899_high_7
Description: NF15899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15899_high_7
NF15899_high_7
[»] chr6 (13 HSPs)
chr6 (21-295)||(33414568-33414840)
chr6 (16-295)||(33258194-33258473)
chr6 (98-295)||(33269541-33269740)
chr6 (74-271)||(31564921-31565117)
chr6 (21-272)||(33395074-33395326)
chr6 (16-175)||(33293092-33293251)
chr6 (16-243)||(33278972-33279194)
chr6 (181-274)||(33384049-33384141)
chr6 (27-119)||(28872999-28873091)
chr6 (116-249)||(33406916-33407049)
chr6 (116-240)||(33280358-33280482)
chr6 (116-219)||(33395858-33395961)
chr6 (21-61)||(33384166-33384206)
[»] chr2 (2 HSPs)
chr2 (16-274)||(17447703-17447961)
chr2 (41-222)||(17445421-17445606)
[»] scaffold0428 (3 HSPs)
scaffold0428 (16-295)||(2315-2594)
scaffold0428 (16-243)||(15059-15281)
scaffold0428 (116-240)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 33414840 - 33414568
Alignment:
Q  21 gtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatccgctga 120  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  121 taagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgacttt 220  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggacttt 33414641  T
Q  221 gttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||  || ||||||||||||    
T  33414640 gttggcagaagtgagaaattcaaggag-ttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 33258473 - 33258194
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatcc 115  Q
    |||| |||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| |||||||||| ||||  ||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaacc 214  Q
    |||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| ||||||||||||||||||||| ||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  215 gactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  33258273 gactttgttggcagaagtgagaaatttaaggag-ttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 98 - 295
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  98 aaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata----cattcacgatgaacgcatcggtgttcta 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||| ||| | ||||||||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  194 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagtagctttttggtccacaggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||  || ||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaag-ttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggt 33269543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 31564921 - 31565117
Alignment:
Q  74 gaaaaggcgcaagcatacctcaggaaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacg 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| ||  ||||||| |||||||||||||||||||||||    
T  31564921 gaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacg 31565020  T
Q  174 atgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgca 271  Q
    ||  ||||||  ||||||||||||||||||| |||||||| |||||| | || ||||||||||||||||||||| |||||| ||||||||||||||||    
T  31565021 attcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggag-ttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 33395326 - 33395074
Alignment:
Q  21 gtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatccgctga 120  Q
    |||| ||||| |||||||||||||||||  | || ||||   |||| ||||| |||||||| ||| ||||||| || | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  121 taagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgacttt 220  Q
     |||||||| |  || ||||||||||||| ||||||||||| ||||||| |||||| |||||||  |||||| |||||||||||||||||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgacttt 33395127  T
Q  221 gttgg--cagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaa 272  Q
    |||||  ||||||||| | |||||||||| ||||||| ||||||| ||||||||    
T  33395126 gttggcacagaagtgatagattcaaggag-ttggttgctgatctttcaatgcaa 33395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 33293251 - 33293092
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatcc 115  Q
    |||| |||| ||||||||||||||||||||||| | |||||||| |||||| ||||| ||||||| | ||||||||||||| |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgat 175  Q
    ||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgat 33293092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 33279194 - 33278972
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatcc 115  Q
    |||| |||| |||| |||||||||||| || || ||||| ||||  |||||  |||  |||||||||||||||||||| || ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 33279096  T
Q  116 gctgataagaaatctg-caagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaacc 214  Q
    ||||| |||||||| | |||| |||    || ||| |||||| ||||||||||||||||||  || |||| |||||||||||||||| ||||||||||||    
T  33279095 gctgacaagaaatccggcaag-cta----ctaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  215 gactttgttggcagaagtgagaaattcaa 243  Q
    ||||||| |||||||||| ||||||||||    
T  33279000 gactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 33384141 - 33384049
Alignment:
Q  181 catcggtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagt 274  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  33384141 catcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggag-ttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  27 ggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatccgctg 119  Q
    |||||||||||||||||||||| ||||| |||| |||||| ||||| ||||||||| |||||||||||||  |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 33407049 - 33406916
Alignment:
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 215  Q
    ||||||||||||||   |||||||||||| || | || || ||||||||| ||| || ||  | ||||  ||||| |||||| |||||||| ||||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatatattgacaatttatgcattagtgttataattgtagtgaactatgaaaccg 33406950  T
Q  216 actttgttggcagaagtgagaaattcaaggagtt 249  Q
    |||||||||||||||||||| ||||| |||||||    
T  33406949 actttgttggcagaagtgagcaattcgaggagtt 33406916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 215  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  216 actttgttggcagaagtgagaaatt 240  Q
    ||||| |||||||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 33395961 - 33395858
Alignment:
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 215  Q
    ||||||||||||||   ||||||| |||| |||| || || ||||||||| |||||| ||  | ||||  |||||||| ||||| |||||| ||||||||    
T  33395961 gctgataagaaatcgagaagactaacagccgaaggaaaaaccggtacataaattcacaattcatgcattagtgttctagttgaattgaactatgaaaccg 33395862  T
Q  216 actt 219  Q
    ||||    
T  33395861 actt 33395858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33384206 - 33384166
Alignment:
Q  21 gtgcagggatgatggactgtaagaaagcacttgctgaaaaa 61  Q
    |||||| ||||||||||||||||||||  ||||||||||||    
T  33384206 gtgcagagatgatggactgtaagaaagttcttgctgaaaaa 33384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 17447703 - 17447961
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaaggg-tctctcatc 114  Q
    |||| |||| ||||| ||||||||||||||||| ||||| ||||  ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  115 cgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaacc 214  Q
    ||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaacc 17447902  T
Q  215 gactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagt 274  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  17447903 gactttgttggcagaagggagagattcaaggag-ttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 17445421 - 17445606
Alignment:
Q  41 aagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcata----cctcaggaaaaagggtctctcatccgctgataagaaatctgcaaga 136  Q
    ||||||||  |||||||||  ||||| ||||| |||||||| ||||||||    ||| || ||||| | ||||||||| ||||  || ||||| |  ||     
T  17445421 aagaaagccattgctgaaactgaaggtgatcttgaaaaggctcaagcatatataccttagtaaaaaagctctctcatcagctggcaataaatccggcagg 17445520  T
Q  137 ctagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgt 222  Q
    |||||| |||||  || ||||||||||| |||||| ||   | ||| ||||||||||||||||| ||||||||||||| |||||||    
T  17445521 ctagcaactgaaagaaaaatcggtacattcattcatgactcatgcaacggtgttctaattgaagggaactgtgaaaccaactttgt 17445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 2594 - 2315
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatcc 115  Q
    |||| |||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| |||||||||| ||||  ||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaacc 214  Q
    |||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| ||||||||||||||||||||| ||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  215 gactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  2394 gactttgttggcagaagtgagaaatttaaggag-ttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 15059 - 15281
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctcatcc 115  Q
    |||| |||| |||| |||||||||||| || || ||||| ||||  |||||  |||  |||||||||||||||||||| || ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 15157  T
Q  116 gctgataagaaatctg-caagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaacc 214  Q
    ||||| |||||||| | |||| |||    || ||| |||||| ||||||||||||||||||  || |||| |||||||||||||||| ||||||||||||    
T  15158 gctgacaagaaatccggcaag-cta----ctaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  215 gactttgttggcagaagtgagaaattcaa 243  Q
    ||||||| |||||||||| ||||||||||    
T  15253 gactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  116 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 215  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  216 actttgttggcagaagtgagaaatt 240  Q
    ||||| |||||||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

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