View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_high_13 (Length: 401)

Name: NF1589_high_13
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_high_13
NF1589_high_13
[»] chr8 (1 HSPs)
chr8 (9-385)||(35798126-35798501)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 35798501 - 35798126
Alignment:
Q  9 agcaaaggattgtgtcttatggcccgcacgtgtcataggatgttgtgattagctagcatatatgctttatatttctttcaacattcgagtatattgttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35798501 agcaaaggattgtgtcttatggcccgcacgtgtcataggatgttgtgattagctagcatatatgctttatatttctttcaatattcgagtatattgttaa 35798402  T
Q  109 acnnnnnnnnttaaatctttcaaacatttacaggacannnnnnnncatgtgtttgaatgatcttataattt-cttgcaatataaccacttattccatcct 207  Q
    ||        |||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35798401 acaaaaaaaattaaatctttcaaacatttacaggacattttttttcatgtgtttgaatgatcttataattttcttgcaatataaccacttattccatcct 35798302  T
Q  208 ctttnnnnnnnnnnnnnnnnnnctccttccataatttgtaggagagnnnnnnnngttggaaagctaaagacaaacgaaacaaaacaaagagaaatgcaac 307  Q
    ||||                  |||||| |||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||| |||    
T  35798301 ctttaaaaaaaaaaaaaaaa--ctccttgcataatttgtaggagagttttttttgttggaaagctaaagacaaacaaaacaaaacaaagagaaatgaaac 35798204  T
Q  308 aagctcttgggaaccaagtttccatagtctcacaaaggaggggtggaccaagacattaaagttagaagaagcacttat 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35798203 aagctcttgggaaccaagtttccatagtctcacaaaggaggggtggaccaagacattaaagttagaagaagcacttat 35798126  T

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