View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_high_18 (Length: 377)
Name: NF1589_high_18
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 12529259 - 12529119
Alignment:
| Q |
1 |
ataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaat |
100 |
Q |
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| T |
12529259 |
ataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaacaaat |
12529160 |
T |
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| Q |
101 |
aaatattatgtaagatctttatggtaattacttgtcaaattgct |
144 |
Q |
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| T |
12529159 |
aaatattatgtaagatctttattg---ttacttgtcaaattgct |
12529119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 12529098 - 12528976
Alignment:
| Q |
202 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
301 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||| |||| |
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| T |
12529098 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggcacaagttagttgaaa--attat |
12529001 |
T |
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| Q |
302 |
accgtaaccccaaaccaaagccttt |
326 |
Q |
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|||||||| ||||||||||||||| |
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| T |
12529000 |
accgtaacttcaaaccaaagccttt |
12528976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 44668578 - 44668733
Alignment:
| Q |
202 |
ctgattatagtgctaatgaataattgtgttttcttggtaattaaaagatgatattttgatagaaccaaataactaggtagaagttaattgaaacttttat |
301 |
Q |
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| T |
44668578 |
ctgattatagtgctaatgaataaccgtgtttccttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagttgaaa--attat |
44668675 |
T |
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| Q |
302 |
accgtaaccccaaaccaaagcctttggtaaggatcaggaggagtacccgaagtttgaaact |
362 |
Q |
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| T |
44668676 |
accgttaccccaaaccaaagcctttaataaggatc---aagagtaccctaagtttgaaact |
44668733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 44668454 - 44668557
Alignment:
| Q |
38 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaagtattttattcaaataaatattatgtaagatctttatggtaattacttgtca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
44668454 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaccaaataaatattatgtaagatctttattg---ttacttgtca |
44668550 |
T |
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| Q |
138 |
aattgct |
144 |
Q |
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||||||| |
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| T |
44668551 |
aattgct |
44668557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44668386 - 44668438
Alignment:
| Q |
1 |
ataagaatttaggaacaaaatatgttttaaaagtaatagatgaaatgataatt |
53 |
Q |
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||||||||||||| | | | |||||||||| ||||||||||||||||||||| |
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| T |
44668386 |
ataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
44668438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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