View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1589_high_2 (Length: 666)
Name: NF1589_high_2
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 623; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 12 - 645
Target Start/End: Complemental strand, 28915123 - 28914489
Alignment:
| Q |
12 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28915123 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
28915024 |
T |
|
| Q |
112 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28915023 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
28914924 |
T |
|
| Q |
212 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914923 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
28914824 |
T |
|
| Q |
312 |
aaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914823 |
aaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaag |
28914724 |
T |
|
| Q |
412 |
ctaatatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914723 |
ctaatatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatga |
28914624 |
T |
|
| Q |
512 |
tgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccacatatgcaatagttgcaacatttattggaatcta-taagagt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28914623 |
tgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccacatatgcaatagttgcaacatttattggaatctagtaagagt |
28914524 |
T |
|
| Q |
611 |
ttcagttattaaagtgagggaagactagatggtta |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
28914523 |
ttcagttattaaagtgagggaagactagatggtta |
28914489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 93 - 571
Target Start/End: Complemental strand, 28924272 - 28923801
Alignment:
| Q |
93 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
192 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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|
| T |
28924272 |
tataccaatttcttcaaaatctagccttaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatgtaacagatcctcaccttacc |
28924173 |
T |
|
| Q |
193 |
acatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| | |
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|
| T |
28924172 |
acatgcttgataaaatctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaag |
28924073 |
T |
|
| Q |
293 |
tctatttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataag |
392 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||| ||||| ||||| | |
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|
| T |
28924072 |
tctatttcttccattgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtg |
28923973 |
T |
|
| Q |
393 |
taatgttatgtgattgaagctaatat-----gtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatt |
487 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||| |||||||||| || ||| ||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
28923972 |
taatgtcatatgattgaagctaatattatacatgtcaatggcat--agaaggggccgttgaaccggtgggaaaaggagaggggtcgcatgggatacgatg |
28923875 |
T |
|
| Q |
488 |
taattcacatgggagaagcaatgatgagcattaataccaacagccgattgagaaacataagcatactatagatttaatgccaca |
571 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28923874 |
taaatcacaggggagaagcaa----------aaataccaacagctcattgagaaacaaaagcatactatagatttaatgccaca |
28923801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 16 - 563
Target Start/End: Complemental strand, 28900684 - 28900138
Alignment:
| Q |
16 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |||||||| |||| |||||||||| ||||| || |||||||||||||| |||| | |
|
|
| T |
28900684 |
catcaggtatccatagatcaagcttgagacataagctagagtatattaatatttgcagctatctacgagtcttctattataccaatttcttcaaaatcta |
28900585 |
T |
|
| Q |
116 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
215 |
Q |
| |
|
|| || |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||| | || |
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|
| T |
28900584 |
gcctttaatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatgcaacagaccctcaccttaccacatgcttgataaaatcttaaat |
28900486 |
T |
|
| Q |
216 |
tcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtct-atttattccattgtagaaa |
314 |
Q |
| |
|
||||| || ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| ||| | || |||| |||| ||| |||||||||| |
|
|
| T |
28900485 |
tcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatgtctaatttcttcaattgtagaaa |
28900387 |
T |
|
| Q |
315 |
ttatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaagcta |
414 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| ||| |||||||| | |||| | | ||| || |||| |||| ||||||| || ||| | |||||| |
|
|
| T |
28900386 |
tcatagaaagctatatctccaaatggttattaaggcttgtcttttaacttcatgtccaatatatcattcactaatgtgtaatgtcatatgactaaagcta |
28900287 |
T |
|
| Q |
415 |
atatgtgtcaatggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatgatga |
514 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||| | || ||| ||||| |||||||||||||| || |
|
|
| T |
28900286 |
atatatgtcaatggcatagagaaggggccattgaactgatgggaaaaggagaggggtcacatgggatacaatgtaaatcacaggggagaagcaatgagga |
28900187 |
T |
|
| Q |
515 |
gcattaataccaacagccgattgagaaacataagcatactatagattta |
563 |
Q |
| |
|
||| ||||| ||||| | |||||||||| |||||||||||| ||||| |
|
|
| T |
28900186 |
gcaataatatcaacaacttcttgagaaacagaagcatactatatattta |
28900138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 28933225 - 28932823
Alignment:
| Q |
16 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
28933225 |
catcaggtatccatagatcaagtttgagacttaagctagagtattttaatatttatagctatctactagtctactactataccaatttcttcaaaatcta |
28933126 |
T |
|
| Q |
116 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
215 |
Q |
| |
|
| || |||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||| | ||| | |||||||| ||||| |||| || | |
|
|
| T |
28933125 |
tccttcggttaatgctattcgcatgtttaaactattcttttgcctg-aatataaatgcaatggattcatgccttaccacatgctggataatatctcatgt |
28933027 |
T |
|
| Q |
216 |
tcattttttcgtttggtaa-ttaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaac-gt-------ctatttattccat |
306 |
Q |
| |
|
|||| || | | ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||||| || | |||| |||||| |
|
|
| T |
28933026 |
tcatattat-gcttggtaagttaaaatgtaaaggtagtagccaatacatgttttgactcttctgcgttgaagtcaactgtcaaagcccaatttcttccat |
28932928 |
T |
|
| Q |
307 |
tgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgat |
406 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |||| | ||| ||||||| |||||| | ||| | ||||||| |
|
|
| T |
28932927 |
tgtagtaatcatagaaagctatatctatgcatggttattagagcctgtcttttcacctcacatccaatataacattcattaatatgcaatatcatgtgat |
28932828 |
T |
|
| Q |
407 |
tgaag |
411 |
Q |
| |
|
||||| |
|
|
| T |
28932827 |
tgaag |
28932823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 326 - 517
Target Start/End: Complemental strand, 28890166 - 28889975
Alignment:
| Q |
326 |
tatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgattgaagct-aatatgtgtca |
424 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| |||||||| |||||||||| ||||||| ||||| ||||||| |||||||||| | | ||||| ||||| |
|
|
| T |
28890166 |
tatatcttcacgtggttattaggacctgtattttcattccacgcctaatataacattcattaatgtgtaatgtcatgtgattgatgttaaatatatgtca |
28890067 |
T |
|
| Q |
425 |
atggcatagagaaggggccatttaactggtgggaaaaggagaagggtcacacgggatgcgatttaattcacatgggagaagcaatgatgagca |
517 |
Q |
| |
|
|| |||||||||||||| ||| ||| ||||||||||||| ||| |||||| | ||| | || ||| ||||| ||||||| |||||| ||||| |
|
|
| T |
28890066 |
atatcatagagaaggggcgattgaaccggtgggaaaagga-aagagtcacatgagatacaatgtaaatcacaggggagaaacaatgaggagca |
28889975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 28924334 - 28924286
Alignment:
| Q |
16 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaa |
64 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
28924334 |
catcaggtatccatatatcaagattgagatttaagctggagcatattaa |
28924286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 633
Target Start/End: Complemental strand, 29403908 - 29403853
Alignment:
| Q |
579 |
tagttgcaacatttattggaatctat-aagagtttcagttattaaagtgagggaag |
633 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29403908 |
tagttgcaatatttattggaatctaggaagagtttcagttattaaagagagggaag |
29403853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 645
Target Start/End: Original strand, 20039426 - 20039488
Alignment:
| Q |
584 |
gcaacatttattggaatctat-aagagtttcagttattaaagtgagggaagactagatggtta |
645 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| || ||||| ||||| ||||| |
|
|
| T |
20039426 |
gcaacatttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggtta |
20039488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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