View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_high_20 (Length: 362)
Name: NF1589_high_20
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_20 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 24641208 - 24641569
Alignment:
| Q |
1 |
attaactttagcagcaagaaatcacaactagtaagtaattgttcgtgatttcctgaagtagatgtgatatggcataaacaattatcgtatcactctgagt |
100 |
Q |
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| T |
24641208 |
attaactttagcagcaagaaatcacaactagtaagtaattgttcgtgatttcctgaagtagatgtgatatggcataaacaattatcgtatcactctgagt |
24641307 |
T |
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| Q |
101 |
ctgaggtagctattttgttgagtttggctcaaacccgaattcaaaagtaaaaataaaatcaagctataagcagccggtacttaaaagcagaaaatcttac |
200 |
Q |
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| T |
24641308 |
ctgaggtagctattttgttgagtttggctcaaactcgaattcaaaagtaaaaataaaatcaagctataagcagccggtacttaaaagcagaaaatcttac |
24641407 |
T |
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| Q |
201 |
attgattttccatatataaataccattgaaacagacacagcattcgctgaagacaacagaattgcattatatctttaggcaaagtaataaaatttaggcc |
300 |
Q |
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| T |
24641408 |
attgattttccatatataaataccattgaaacagacacagcattcgctgaagacaacagaattgcattatatctttaggcaaagtaataaaatttaggcc |
24641507 |
T |
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| Q |
301 |
tgtattcctttttcaattataatgcctagatttaatttctttcggtggatcaagtacccaat |
362 |
Q |
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| T |
24641508 |
tgtattcctttctcaattataatgcctagatttaatttctttcggtggatcaagcacccaat |
24641569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24692412 - 24692780
Alignment:
| Q |
1 |
attaactttagcagcaagaaatcacaactagtaagtaattgttcgtgatttcctgaagtagat----gtgatatggcataaacaattatcgtatcactct |
96 |
Q |
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| T |
24692412 |
attaactttagcaacaagaaatcacaactagtaagtaattgtttgagatttcatgcagtagatcgatgtgatatggcatagacaattatcatgt---tct |
24692508 |
T |
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| Q |
97 |
gagtctgaggtagctatttt-gttgagtttggctcaaacccgaattcaaaagtaaaaataaaatcaagctataagcagccggtacttaaaagcagaaaat |
195 |
Q |
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||||||||||| |||| |||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
24692509 |
----ctgaggtagctttttttgttgagttaggctcaaactcaaattcaaaagtaaaaataaaat-aagctataagcagccagcacttaaaagcagaaaat |
24692603 |
T |
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| Q |
196 |
cttacattgattttccatatataaata--ccattgaaacagacacagcattcgctg-------------aagacaacagaattgcattatatctttaggc |
280 |
Q |
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| T |
24692604 |
cttacattgattttccatatacagataatccattgaaacagacacagcattcgctgaattaataaggaaaagacaacagagttgcattatatttttaggc |
24692703 |
T |
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| Q |
281 |
aaagtaataaaatttaggcctgtattcctttttcaattataatgcctagatttaatttctttcggtggatcaagtaccc |
359 |
Q |
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| T |
24692704 |
aaattaat-aaatttaggcctgtattcc-ttttcaattttaatgcctagatttaatttatttcggtgtatcaagtaccc |
24692780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 24678640 - 24678776
Alignment:
| Q |
104 |
aggtagctattttgttgagtttggctcaaacccgaattcaaaagtaaaaataaaatcaagctataagcagccggtacttaaaagcagaaaatcttacatt |
203 |
Q |
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|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||| | |||||||| | | ||||||||||||||||| ||||||| |
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| T |
24678640 |
aggtagcttttttgttgagttaggctcaaacccaaattcaaaagtaaaaataaaaacaaaccataagcagtcagcacttaaaagcagaaaattttacatt |
24678739 |
T |
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| Q |
204 |
gattttccatatataaat--accattgaaacagacac |
238 |
Q |
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| T |
24678740 |
gattttccatatataaataaaccattgaaacatacac |
24678776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 24720099 - 24720167
Alignment:
| Q |
104 |
aggtagctattttgttgagtttggctcaaacccgaattcaaaagtaaaaataaaatcaagctataagca |
172 |
Q |
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| T |
24720099 |
aggtagcttttttgttgagttagactcaaactcaaattcaaaagtaaaaataaaaacaaacaataagca |
24720167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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