View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_high_24 (Length: 305)
Name: NF1589_high_24
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 43182844 - 43182552
Alignment:
| Q |
1 |
tcatcattagcagtgccaaagttccatacgtagaatttgtgatttaacaaaattgtagggatcacttaaaccgttcaacaagtttacaacacattcaaaa |
100 |
Q |
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| T |
43182844 |
tcatcattagcagtgccaaagttccatacgtagaatttgtgatttaacaaaattgtagggatcacttaaaccattcaacaagtttacaacacattcaaaa |
43182745 |
T |
|
| Q |
101 |
tctcgaagcaactcgatgtct--gagatatccacaagaatatttcacagaacacatacaatctttaatacggcataaagcctctaattcgtcccatacgg |
198 |
Q |
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| T |
43182744 |
tctcgaagcaactcgatgtctttgagatatccacaagaatatttcacagaacacatacaatctttaatacggcataaagcctctaattcgtcccatacgg |
43182645 |
T |
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| Q |
199 |
ttttcaacaaactgaagagattagttacatattgttcaccttgtttgaaagagggttttggcattgtcgatttagtcagcgctagaagaaatt |
291 |
Q |
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| T |
43182644 |
ttttcaacaaagtgaagagattagttacatattgttcaccttgtttgaaagagggttttggcattgtcggtttagtcagcgctagaagaaatt |
43182552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 43063493 - 43063671
Alignment:
| Q |
73 |
gttcaacaagtttacaacacattcaaaatctcgaagcaactcgatgtctgagatatccacaagaatatttcacagaacacatacaatctttaatacggca |
172 |
Q |
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|||||| ||| |||||| ||||||| ||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
43063493 |
gttcaagaagcttacaaaacattcagaatttcgttagaactcgatgtcgcaaatatccagaagaatatttcacagaacacatacaatctttaatagggca |
43063592 |
T |
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| Q |
173 |
taaagcctctaattcgtcccatacggttttcaacaaactgaagagattagttacatattgttcaccttgtttgaaagag |
251 |
Q |
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| T |
43063593 |
taaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcgtacatcttgtttgaaagag |
43063671 |
T |
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