View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_high_28 (Length: 260)
Name: NF1589_high_28
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 40036698 - 40036929
Alignment:
| Q |
20 |
tgctgctatgttgtaattgaaccatcttgttagtgtttgcataannnnnnnccttgacttgtatttctgttatattaccattgttattcttggtgttatt |
119 |
Q |
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| T |
40036698 |
tgctgctatgttgtaattgaaccatcttgttagtgtttgcataatttttttccttgacttgtatttctgttatattaccattgttattcttggttttatt |
40036797 |
T |
|
| Q |
120 |
gaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40036798 |
gaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaa |
40036897 |
T |
|
| Q |
220 |
attggatttgctccatgtgttttgagaataat |
251 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
40036898 |
attggatttgctccatgtgttttgagcataat |
40036929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 40031354 - 40031585
Alignment:
| Q |
19 |
atgctgctatgttgtaattgaaccatcttgttagtgtttgcataannnnnnnccttgacttgtatttctgttatattaccattgttattcttggtgttat |
118 |
Q |
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||||||||||| ||||||||| ||||||| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||| | |||| |
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| T |
40031354 |
atgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttct-ccatgacttgtttttctgttgtattaccattgttattcttcggtttat |
40031452 |
T |
|
| Q |
119 |
tgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgtta |
218 |
Q |
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| T |
40031453 |
tgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttcttta |
40031552 |
T |
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| Q |
219 |
aattggatttgctccatgtgttttgagaataat |
251 |
Q |
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| T |
40031553 |
aactggatttgctccatgtgttttgagcataat |
40031585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 1346992 - 1346864
Alignment:
| Q |
117 |
attgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgt |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
1346992 |
attgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgt |
1346893 |
T |
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| Q |
217 |
taaattggatttgctccatgtgttttgag |
245 |
Q |
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| T |
1346892 |
taaattggatctgcttcatatgttttgag |
1346864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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