View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1589_high_29 (Length: 256)
Name: NF1589_high_29
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_29 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 47424403 - 47424511
Alignment:
| Q |
148 |
tacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgctg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47424403 |
tacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgctg |
47424502 |
T |
|
| Q |
248 |
aacctaggt |
256 |
Q |
| |
|
||||||||| |
|
|
| T |
47424503 |
aacctaggt |
47424511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 47424275 - 47424335
Alignment:
| Q |
20 |
tttaaaatcacatttggagaacaatctatcaaaatttaaccgttattgtacaatataaggt |
80 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47424275 |
tttaaaatcatatttggagaacaatctatcaaaatttaaccattattgtacaatataaggt |
47424335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University