View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_high_30 (Length: 256)

Name: NF1589_high_30
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_high_30
NF1589_high_30
[»] chr8 (1 HSPs)
chr8 (1-238)||(27294536-27294773)
[»] chr3 (27 HSPs)
chr3 (66-218)||(21945632-21945784)
chr3 (66-218)||(22034525-22034677)
chr3 (66-218)||(22115093-22115245)
chr3 (66-218)||(22186996-22187148)
chr3 (67-218)||(21937161-21937312)
chr3 (66-218)||(22052741-22052893)
chr3 (66-217)||(22028009-22028160)
chr3 (66-230)||(21930417-21930581)
chr3 (66-218)||(22179425-22179577)
chr3 (71-218)||(22104731-22104878)
chr3 (66-218)||(30989611-30989763)
chr3 (66-193)||(22615565-22615692)
chr3 (100-214)||(18967325-18967439)
chr3 (66-177)||(22621220-22621331)
chr3 (66-216)||(22657372-22657522)
chr3 (69-201)||(22208045-22208177)
chr3 (72-214)||(22648470-22648612)
chr3 (122-171)||(22436996-22437045)
chr3 (120-168)||(22635863-22635911)
chr3 (120-168)||(22368272-22368320)
chr3 (116-174)||(2749082-2749140)
chr3 (122-179)||(2807349-2807406)
chr3 (67-168)||(22431459-22431560)
chr3 (118-174)||(2818644-2818700)
chr3 (120-168)||(22358362-22358410)
chr3 (120-168)||(22468308-22468356)
chr3 (120-168)||(22632225-22632273)
[»] chr1 (3 HSPs)
chr1 (66-218)||(34989225-34989377)
chr1 (66-229)||(34975379-34975542)
chr1 (66-177)||(34980211-34980322)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27294773 - 27294536
Alignment:
Q  1 ctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatggaagagtctattgagacactgtgatccatacacgatagtcaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27294773 ctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatggaagagtctattgagacactgtgatccatacacgatagtcaagg 27294674  T
Q  101 tgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccacagaaactacagtgccctctttccttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27294673 tgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaactacagtgccctctttccttc 27294574  T
Q  201 cctttaccatccaatcaaaaaatatttttcaacgtcct 238  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27294573 cctttaccatccaatcaaaaaatagttttcaacgtcct 27294536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 21945784 - 21945632
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||||||||| |||||||||||| || | |||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21945784 attgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccat 21945685  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||||||||    
T  21945684 tcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaa 21945632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 22034677 - 22034525
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22034677 attgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22034578  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    |||||||||||| || ||||||| ||||| |||||||| ||||||||||||||    
T  22034577 tcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaa 22034525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 22115245 - 22115093
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||||||||||||||||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  22115245 attgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctcccat 22115146  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    ||||||||||||||  ||||||| ||||| |||||||| ||||||||||||||    
T  22115145 tcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaa 22115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 22187148 - 22186996
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22187148 attgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22187049  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    ||||||||||||||  ||||||| ||||| |||||||||||||||||| ||||    
T  22187048 tcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaa 22186996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 21937312 - 21937161
Alignment:
Q  67 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccatt 166  Q
    ||||||||||||||||||||||||| | |||| |||||| | ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  21937312 ttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccatt 21937213  T
Q  167 cctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    |||||||||||||| ||||||| ||||  ||||||||||| |||||||||||    
T  21937212 cctaccacagaaacaacagtgcgctctgcccttccctttatcatccaatcaa 21937161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 22052893 - 22052741
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||||| |||||||| ||| | ||||  ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22052893 attgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22052794  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    |||||||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  22052793 tcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaa 22052741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 22028160 - 22028009
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22028160 attgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22028061  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatca 217  Q
    |||||||||||| || ||||||| ||||| |||||||| ||||| |||||||    
T  22028060 tcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatca 22028009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 21930581 - 21930417
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||||||||||||||||||||| ||  | | ||  ||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  21930581 attgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 21930482  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaaaaaatatttttc 230  Q
    |||||||||||| || ||||||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  21930481 tcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatatttttc 21930417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 22179577 - 22179425
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||||| |||||||||||| | |||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  22179577 attgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccat 22179478  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    ||| |||||  | || ||||||| |||||||||||||| ||||||||||||||    
T  22179477 tcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaa 22179425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 22104878 - 22104731
Alignment:
Q  71 gacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattccta 170  Q
    |||||||||||||| ||| || | |||| |||||| || ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  22104878 gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta 22104779  T
Q  171 ccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
    |||| ||||||||||||| ||||| | |||||||||||||||||||||    
T  22104778 ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaa 22104731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 30989611 - 30989763
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    ||||||||||| |||||||||||||| | |||| |||||| ||||||| | || ||||||||||||||||    ||||||||||| ||||||||||||||    
T  30989611 attgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctcccat 30989710  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
     ||||| ||||||| ||| |||| ||| |  ||||||||||||| ||||||||    
T  30989711 gcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaa 30989763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 22615565 - 22615692
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||||||||||||||||||||||||| | |||| ||||||    || |||||||| |||||||| |||||| | ||||||||||| || |||||||||||    
T  22615565 attgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccat 22615664  T
Q  166 tcctaccacagaaactacagtgccctct 193  Q
    ||| |||||||| || ||||||| ||||    
T  22615665 tcccaccacagagacaacagtgcgctct 22615692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 18967325 - 18967439
Alignment:
Q  100 gtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccacagaaactacagtgccctctttcctt 199  Q
    |||||| |||||||||||| ||||| ||||| ||||  ||||||| |||||||||||||||||||||||||||||||| |  | |||||||||||  ||     
T  18967325 gtgtccaatgacatccttgttgtcagaaactctctttgctagagttgtttttccttgccctcccattcctaccacagagatgatagtgccctcttctctc 18967424  T
Q  200 ccctttaccatccaa 214  Q
    ||||| |||||||||    
T  18967425 cccttcaccatccaa 18967439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 22621220 - 22621331
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| ||||||||| ||||||||    
T  22621220 attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccat 22621319  T
Q  166 tcctaccacaga 177  Q
    ||||||||||||    
T  22621320 tcctaccacaga 22621331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 22657372 - 22657522
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||| |||||||||||||| |||||| | |||| |||||| |  || || ||||||||||||||||| ||  | ||||| ||||||||||||||||||||    
T  22657372 attgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccat 22657471  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatc 216  Q
    ||| || ||||| |  ||||||| ||||   ||||||||||||| ||||||    
T  22657472 tcccacgacagatatgacagtgcgctctgatcttccctttaccaaccaatc 22657522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 22208177 - 22208045
Alignment:
Q  69 gagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||||||||| | |||| || ||| || || || |||||||||||||||| |||| | ||||| ||||| |||||||||||||| ||    
T  22208177 gagacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatccc 22208078  T
Q  169 taccacagaaactacagtgccctctttccttcc 201  Q
     ||||| || || ||||||  |||||| |||||    
T  22208077 aaccaccgagacaacagtgagctcttttcttcc 22208045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 22648470 - 22648612
Alignment:
Q  72 acactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctac 171  Q
    ||||| |||||||||||||| | |||| ||||||    || || ||||||||||| |||||  || | ||||||||||||||| |||||||||| |||||    
T  22648470 acactttgatccatacacgaaattcaaagtgtcccgctacctctttgctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctac 22648569  T
Q  172 cacagaaactacagtgccctctttccttccctttaccatccaa 214  Q
    |||||| |  ||||||| ||||   ||||||| ||||| ||||    
T  22648570 cacagagatgacagtgcgctctgatcttccctctaccaaccaa 22648612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 22436996 - 22437045
Alignment:
Q  122 tcaaaaactttcttgactagagtggtttttccttgccctcccattcctac 171  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  22436996 tcaaaaactttcttggccagagtagtttttccttgccctcccattcctac 22437045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22635863 - 22635911
Alignment:
Q  120 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  22635863 tgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattcc 22635911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22368272 - 22368320
Alignment:
Q  120 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||| ||||||||||||||||  | |||||||||||    
T  22368272 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 22368320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 2749140 - 2749082
Alignment:
Q  116 ttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccac 174  Q
    ||||| |||||||||  |||| | ||||||||||||||| | |||||||||||||||||    
T  2749140 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 2749082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 2807406 - 2807349
Alignment:
Q  122 tcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccacagaaa 179  Q
    |||||||||  |||| | ||||||||||||||| | ||||||||||||||||| ||||    
T  2807406 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa 2807349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 22431459 - 22431560
Alignment:
Q  67 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccatt 166  Q
    |||||||||||||||||||| |||| | |||| ||||   | |||    ||| |||||||||||||||||  |||||||||||||||  | |||||||||    
T  22431459 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 22431558  T
Q  167 cc 168  Q
    ||    
T  22431559 cc 22431560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 2818700 - 2818644
Alignment:
Q  118 gctgtcaaaaactttcttgactagagtggtttttccttgccctcccattcctaccac 174  Q
    |||||||||||||  |||| | ||||||||||||||| | || ||||||||||||||    
T  2818700 gctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccac 2818644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22358362 - 22358410
Alignment:
Q  120 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||  ||||||||||||||||  | |||||||||||    
T  22358362 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 22358410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22468308 - 22468356
Alignment:
Q  120 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||| ||| ||||||||||||  | |||||||||||    
T  22468308 tgtcaaaaactttcttggctatagtggtttttcccagtcctcccattcc 22468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22632225 - 22632273
Alignment:
Q  120 tgtcaaaaactttcttgactagagtggtttttccttgccctcccattcc 168  Q
    ||||||||||||||||| ||||||||||||| ||  | |||||||||||    
T  22632225 tgtcaaaaactttcttggctagagtggttttccccagtcctcccattcc 22632273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 34989377 - 34989225
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| |||||||| || ||  | ||||||||||||||||||||||||||    
T  34989377 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccat 34989278  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa 218  Q
     || || ||||| |  ||||||| ||||   ||||||||||||| ||||||||    
T  34989277 cccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaa 34989225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 34975542 - 34975379
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| |||||||| || ||  | ||||||||||||||||||||||||||    
T  34975542 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccat 34975443  T
Q  166 tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaaaaaatattttt 229  Q
     || || ||||| |  ||||||| ||||   |||||||||||||  |||||||  |||||||||    
T  34975442 cccaactacagagatgacagtgcgctctactcttccctttaccaaacaatcaatcaatattttt 34975379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 34980322 - 34980211
Alignment:
Q  66 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgccctcccat 165  Q
    |||| ||||||||||||||||||||| | |||| |||||| |  || || ||||| ||||||||||| ||  | |||||  |||||||||||||||||||    
T  34980322 attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccat 34980223  T
Q  166 tcctaccacaga 177  Q
    ||| || |||||    
T  34980222 tccaactacaga 34980211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University