View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_high_37 (Length: 247)

Name: NF1589_high_37
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_high_37
NF1589_high_37
[»] chr5 (16 HSPs)
chr5 (1-193)||(41803722-41803914)
chr5 (88-185)||(12115042-12115139)
chr5 (85-188)||(12094273-12094375)
chr5 (89-139)||(22101922-22101972)
chr5 (89-138)||(11142448-11142497)
chr5 (83-139)||(27488355-27488411)
chr5 (92-139)||(73801-73848)
chr5 (83-138)||(29299365-29299420)
chr5 (89-123)||(5818348-5818382)
chr5 (93-139)||(29874335-29874381)
chr5 (92-137)||(8680627-8680672)
chr5 (83-139)||(11931977-11932034)
chr5 (90-139)||(35349497-35349546)
chr5 (88-137)||(38394441-38394490)
chr5 (83-139)||(39239802-39239859)
chr5 (88-124)||(26163974-26164010)
[»] chr3 (14 HSPs)
chr3 (95-186)||(14197739-14197830)
chr3 (83-138)||(12747782-12747837)
chr3 (88-138)||(19649664-19649714)
chr3 (85-123)||(40504271-40504309)
chr3 (86-139)||(49885390-49885443)
chr3 (88-139)||(43448971-43449022)
chr3 (92-139)||(45113751-45113798)
chr3 (96-138)||(2544544-2544586)
chr3 (92-138)||(44118268-44118314)
chr3 (88-138)||(51723391-51723441)
chr3 (81-138)||(19649585-19649642)
chr3 (89-138)||(28043451-28043500)
chr3 (88-137)||(43343532-43343581)
chr3 (83-139)||(45010834-45010890)
[»] chr2 (18 HSPs)
chr2 (93-190)||(7833300-7833397)
chr2 (88-139)||(38983083-38983134)
chr2 (89-139)||(9152463-9152513)
chr2 (85-139)||(11030276-11030330)
chr2 (88-138)||(12486077-12486127)
chr2 (83-124)||(28494803-28494844)
chr2 (83-139)||(20555266-20555322)
chr2 (88-139)||(34447587-34447638)
chr2 (88-139)||(37076229-37076280)
chr2 (89-124)||(43713988-43714023)
chr2 (88-138)||(41153196-41153246)
chr2 (81-138)||(3037810-3037867)
chr2 (84-137)||(4063281-4063334)
chr2 (83-139)||(7943523-7943580)
chr2 (88-137)||(11794462-11794511)
chr2 (88-139)||(4410861-4410913)
chr2 (89-137)||(5559377-5559425)
chr2 (83-139)||(36881541-36881597)
[»] chr4 (28 HSPs)
chr4 (81-138)||(43117939-43117996)
chr4 (88-138)||(30191909-30191959)
chr4 (81-138)||(45828500-45828557)
chr4 (83-134)||(16412242-16412293)
chr4 (83-139)||(55190750-55190806)
chr4 (92-139)||(1100913-1100960)
chr4 (92-139)||(1205166-1205213)
chr4 (83-138)||(3043876-3043931)
chr4 (92-139)||(7086215-7086262)
chr4 (88-131)||(33010687-33010730)
chr4 (92-139)||(33615863-33615910)
chr4 (83-118)||(43413646-43413681)
chr4 (83-138)||(48361060-48361115)
chr4 (83-138)||(53225729-53225784)
chr4 (92-138)||(4418182-4418228)
chr4 (88-138)||(21554193-21554243)
chr4 (89-139)||(23226964-23227014)
chr4 (83-141)||(26066377-26066435)
chr4 (92-138)||(29686485-29686531)
chr4 (89-139)||(44111829-44111879)
chr4 (81-190)||(3043798-3043906)
chr4 (83-140)||(13976848-13976905)
chr4 (81-138)||(34226393-34226450)
chr4 (81-137)||(2643614-2643670)
chr4 (83-123)||(20956989-20957029)
chr4 (83-139)||(41116570-41116626)
chr4 (88-124)||(42670863-42670899)
chr4 (74-138)||(53658449-53658513)
[»] chr7 (24 HSPs)
chr7 (81-139)||(8566165-8566223)
chr7 (81-139)||(41863665-41863723)
chr7 (83-139)||(40234774-40234830)
chr7 (88-139)||(36245460-36245511)
chr7 (81-139)||(11668099-11668157)
chr7 (92-138)||(13860302-13860348)
chr7 (88-138)||(18672106-18672156)
chr7 (83-139)||(10007660-10007716)
chr7 (83-139)||(40142857-40142913)
chr7 (92-139)||(10674207-10674254)
chr7 (92-139)||(22618247-22618294)
chr7 (88-139)||(28677401-28677452)
chr7 (92-139)||(39413912-39413959)
chr7 (92-139)||(41487875-41487922)
chr7 (92-139)||(45025678-45025725)
chr7 (126-193)||(45176560-45176627)
chr7 (89-139)||(48082813-48082863)
chr7 (89-138)||(2399966-2400015)
chr7 (84-137)||(4925900-4925953)
chr7 (93-138)||(16861530-16861575)
chr7 (81-134)||(32811798-32811851)
chr7 (90-138)||(2610202-2610250)
chr7 (83-123)||(13807338-13807378)
chr7 (79-139)||(19512735-19512795)
[»] chr1 (20 HSPs)
chr1 (91-193)||(2855115-2855217)
chr1 (83-141)||(25021313-25021371)
chr1 (75-141)||(27422907-27422973)
chr1 (83-139)||(38040360-38040416)
chr1 (88-139)||(7375553-7375604)
chr1 (92-139)||(19998495-19998542)
chr1 (89-139)||(44939150-44939200)
chr1 (89-138)||(25021245-25021294)
chr1 (88-137)||(33018254-33018303)
chr1 (89-193)||(15285466-15285570)
chr1 (92-139)||(13321798-13321845)
chr1 (92-139)||(18038772-18038819)
chr1 (83-138)||(50155383-50155438)
chr1 (88-138)||(34146889-34146939)
chr1 (92-138)||(34174903-34174949)
chr1 (83-124)||(26760272-26760313)
chr1 (83-123)||(29892230-29892270)
chr1 (82-139)||(38590150-38590209)
chr1 (83-139)||(38738015-38738071)
chr1 (83-139)||(49944841-49944897)
[»] chr8 (18 HSPs)
chr8 (94-139)||(24599753-24599798)
chr8 (75-139)||(9633081-9633145)
chr8 (92-139)||(30734535-30734582)
chr8 (81-139)||(35149752-35149810)
chr8 (88-165)||(6354705-6354782)
chr8 (83-138)||(7693118-7693173)
chr8 (83-138)||(8793727-8793782)
chr8 (83-138)||(24822808-24822863)
chr8 (92-139)||(34604865-34604912)
chr8 (92-139)||(34745341-34745388)
chr8 (92-139)||(38298585-38298632)
chr8 (92-139)||(43932133-43932180)
chr8 (89-139)||(1223137-1223187)
chr8 (89-138)||(10184636-10184685)
chr8 (88-137)||(10839776-10839825)
chr8 (88-133)||(15726849-15726894)
chr8 (97-130)||(26268045-26268078)
chr8 (89-138)||(34711095-34711144)
[»] scaffold0110 (1 HSPs)
scaffold0110 (89-138)||(1617-1666)
[»] chr6 (6 HSPs)
chr6 (83-139)||(3064891-3064947)
chr6 (88-124)||(28630852-28630888)
chr6 (92-125)||(23916225-23916258)
chr6 (81-138)||(30627908-30627965)
chr6 (91-123)||(1301932-1301964)
chr6 (83-139)||(33119986-33120042)
[»] scaffold0767 (1 HSPs)
scaffold0767 (92-139)||(3893-3940)
[»] scaffold0070 (1 HSPs)
scaffold0070 (83-139)||(40153-40209)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 41803722 - 41803914
Alignment:
Q  1 tccttaaaaaatgtcctcaaaagttagaatactctttaaaaagattataaatttcgtaatttacgttaatcaacactcatttcggttctatttataagaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41803722 tccttaaaaaatgtcttcaaaagttagaatactctttaaaaagatcataaatttcgtaatttacgttaatcaacattcatttcggttctatttataagaa 41803821  T
Q  101 acaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaaaaaatcaa 193  Q
    ||||||||  |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  41803822 acaattgacgttttagattcattgtttaatttgtgtatccgagttgaaatatttatcagatacatctactcttcaataaatctaaaaagtcaa 41803914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 12115139 - 12115042
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaa 185  Q
    ||||||||| ||||||||  ||||||||||||||||| ||||||| |||||||    ||||||||| |||||||||||  ||| |||||| |||||||    
T  12115139 ctatttataggaaacaatcaattttttagattcattgcttaattgttgtatcccctctgaaatatagatcagatacattaactattcaataaatctaa 12115042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 12094375 - 12094273
Alignment:
Q  85 gttctatttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatcta 184  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||| |||||| |   | ||||||| | || ||||||| ||| || ||| ||||||    
T  12094375 gttctatttataagaaacaattaatttttta-aatcattgtttaattgttgtatctggtctaaaatatagaccacatacatcaactatttaataaatcta 12094277  T
Q  185 aaaa 188  Q
    ||||    
T  12094276 aaaa 12094273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 22101922 - 22101972
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| | ||||||||||||||||||||| ||||| |||||||    
T  22101922 tatttataagaaaaatttgattttttagattcattgtgtaattaatgtatc 22101972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 11142497 - 11142448
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||||||| ||||||| |||||||||  ||||||||||||    
T  11142497 tatttataagaaacaattcatttttttgattcattgaataattgatgtat 11142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 27488355 - 27488411
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| |||| ||||||||||||||||   |||||||||||||    
T  27488355 cggtcctatttataagaaaaaattaattttttagattcattcaataattgatgtatc 27488411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 73801 - 73848
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| |||||||||| |||||||||||||||| ||| |||||||||    
T  73801 ttataaaaaacaattgactttttagattcattgtgtaaatgatgtatc 73848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 29299365 - 29299420
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| | ||||||||||||||||||||  | ||||||||||    
T  29299365 cggtcctatttataagaaaaatttgattttttagattcattgagtgattgatgtat 29299420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 5818382 - 5818348
Alignment:
Q  89 tatttataagaaacaattgattttttagattcatt 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  5818382 tatttataaaaaacaattgattttttagattcatt 5818348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 29874335 - 29874381
Alignment:
Q  93 tataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||    
T  29874335 tataagaaacaattgacttttttggttcattgtttaagtgatgtatc 29874381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 8680672 - 8680627
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||| |||| ||||||| |||||||||||| |||||||    
T  8680672 ttataagaaacatttgactttttaggttcattgtttaagtgatgta 8680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 11931977 - 11932034
Alignment:
Q  83 cggttctatttataagaaacaa-ttgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| || |||| |||||||||||||||| ||||| |||||||    
T  11931977 cggtcctatttataagaaaaaaattgactttttagattcattgtgtaattaatgtatc 11932034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 35349546 - 35349497
Alignment:
Q  90 atttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||| ||| |||||| |||||||||||||||  |||||||||||||    
T  35349546 atttataaaaaataattgactttttagattcattgagtaattgatgtatc 35349497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 38394441 - 38394490
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||| |||||| |||||||||||||||  ||||| |||||    
T  38394441 ctatttataagaaaaaattgactttttagattcattgaataattaatgta 38394490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 39239802 - 39239859
Alignment:
Q  83 cggttctatttataagaaacaa-ttgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||| || |||  |||||||||||||||| ||||| |||||||    
T  39239802 cggttctatttataagaaaaaaattgtctttttagattcattgtgtaattaatgtatc 39239859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 26163974 - 26164010
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattg 124  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  26163974 ctatttataagaaacaattgactttttagatttattg 26164010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 14197830 - 14197739
Alignment:
Q  95 taagaaacaattgattttttagattcattgtttaattgatgtatccgagt-tgaaatatatatcagatacatctactcttcaattaatctaaa 186  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| ||| || |||||||| |||||||||| |||||||||| ||||||||    
T  14197830 taagaaacaattgactttttagattcattgcttgattgatgtatcc-agtctgtaatatataccagatacatcaactcttcaatgaatctaaa 14197739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 12747837 - 12747782
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| |||||||||||||||||||| |  ||||||||||||    
T  12747837 cggtcctatttataagaaaaaattgattttttagattcatcgagtaattgatgtat 12747782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 19649714 - 19649664
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||| |||||||| ||||||||||||||||||||  ||||||||||||    
T  19649714 ctatttacaagaaacatttgattttttagattcattgagtaattgatgtat 19649664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 40504309 - 40504271
Alignment:
Q  85 gttctatttataagaaacaattgattttttagattcatt 123  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  40504309 gttctatttataagaaacaattgatttttttgattcatt 40504271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 49885390 - 49885443
Alignment:
Q  86 ttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||| |||| ||||||||||||||||   |||||||||||||    
T  49885390 ttctatttataagaaaaaattaattttttagattcattcaataattgatgtatc 49885443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 43448971 - 43449022
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| | ||||||||||||||||||||  |||||||| ||||    
T  43448971 ctatttataagaaaaagttgattttttagattcattgagtaattgatatatc 43449022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 45113751 - 45113798
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  45113751 ttataagaaacaattgatttttttggttcattgtgtaagtgatgtatc 45113798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 2544586 - 2544544
Alignment:
Q  96 aagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||    
T  2544586 aagaaacaattgactttttagattcattgtataagtgatgtat 2544544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 44118314 - 44118268
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||    
T  44118314 ttataagaaacaattgactttttagattcattatataattaatgtat 44118268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 51723391 - 51723441
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| | ||||||||||||||||||||  ||||| ||||||    
T  51723391 ctatttataagaaaaagttgattttttagattcattgagtaattaatgtat 51723441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 19649585 - 19649642
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||| |||||| |||||||| |||| ||||| |||||||||  ||||||||||||    
T  19649585 ttcggttttatttacaagaaacatttgacttttttgattcattgaataattgatgtat 19649642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 28043500 - 28043451
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| ||||||| |||||||||||||  ||||| ||||||    
T  28043500 tatttataagaaactattgattatttagattcattgaataattaatgtat 28043451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 43343581 - 43343532
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||||| |||| ||||| |||||||||| ||| |||||||    
T  43343581 ctatttataagaaacatttgacttttttgattcattgtataaatgatgta 43343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 45010890 - 45010834
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||| | |||| |||||||||||| ||||  |||||||||||||    
T  45010890 cggtcctatttataagagaaaattaattttttagatttattgaataattgatgtatc 45010834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 7833300 - 7833397
Alignment:
Q  93 tataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaaaaaat 190  Q
    |||||||||||||  |||||||||||||||||  ||||||||||||| || || ||||||| |||||||||||  ||| || ||| ||||||||||||    
T  7833300 tataagaaacaatcaattttttagattcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaaat 7833397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 38983134 - 38983083
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||| ||| | ||||||||||||||||||||| |||||||||||||    
T  38983134 ctatttataaaaaaaagttgattttttagattcattgtgtaattgatgtatc 38983083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 9152513 - 9152463
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| ||||||||||||| |||||||||||||||  |||||||||||||    
T  9152513 tatttacaagaaacaattgactttttagattcattgagtaattgatgtatc 9152463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 11030330 - 11030276
Alignment:
Q  85 gttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| |||| | |||||||||||||||  |||||||||||||    
T  11030330 gttctatttataagaaaaaattaactttttagattcattgagtaattgatgtatc 11030276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 12486127 - 12486077
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  12486127 ctatttacaagaaacaattgactttttagattcattgaataattgatgtat 12486077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 28494844 - 28494803
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattg 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  28494844 cggttctatttataagaaacatttgatttttttgattcattg 28494803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 20555266 - 20555322
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| |||| ||||||||||| |||||  |||||||||||||    
T  20555266 cggtcctatttataagaaaaaattaattttttagatacattgaataattgatgtatc 20555322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 34447638 - 34447587
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| | ||||||||||||||||||||| ||||  |||||||    
T  34447638 ctatttataagaaaaagttgattttttagattcattgtgtaatcaatgtatc 34447587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 37076280 - 37076229
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||||| || |||||||||| ||||  |||||||||||||    
T  37076280 ctatttataagaaacaatcgactttttagatttattggataattgatgtatc 37076229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 43713988 - 43714023
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattg 124  Q
    |||||||||||||||||||||||||| |||||||||    
T  43713988 tatttataagaaacaattgatttttttgattcattg 43714023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 41153246 - 41153196
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| | |||| |||||||||||||||  ||||||||||||    
T  41153246 ctatttataagaaaaagttgactttttagattcattgagtaattgatgtat 41153196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 3037867 - 3037810
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||| |||| || ||||||||| |||||||||||||||||||  ||||| ||||||    
T  3037867 ttcggtcctatatacaagaaacaaatgattttttagattcattgaataatttatgtat 3037810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 4063281 - 4063334
Alignment:
Q  84 ggttctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||||||| | || ||||||||||||||||   |||||||||||    
T  4063281 ggttctatttataagaaaaagttaattttttagattcattcaataattgatgta 4063334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 7943580 - 7943523
Alignment:
Q  83 cggttctatttataagaaacaa-ttgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| || |||| |||||||||||||||  |||||||||||||    
T  7943580 cggtcctatttataagaaaaaaattgactttttagattcattgaataattgatgtatc 7943523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 11794462 - 11794511
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||| ||||||||||||||||| ||||  ||||| |||||    
T  11794462 ctatttataagaaaaaattgattttttagatttattgaataattaatgta 11794511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 4410913 - 4410861
Alignment:
Q  88 ctatttataagaaacaa-ttgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| || |||| |||||||||||||||| ||||| |||||||    
T  4410913 ctatttataagaaaaaagttgactttttagattcattgtgtaattaatgtatc 4410861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 5559377 - 5559425
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    ||||||||||||| | |||| |||||||||||||||  |||||||||||    
T  5559377 tatttataagaaaaatttgactttttagattcattgagtaattgatgta 5559425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 36881541 - 36881597
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||| | |||| ||||||||| |||||  ||||| |||||||    
T  36881541 cggttctatttataagaaaaatttgactttttagatacattgagtaattaatgtatc 36881597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 43117996 - 43117939
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||    
T  43117996 ttcggttctatttataagaaaaaattgattttttacattcattgaataattgatgtat 43117939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 30191909 - 30191959
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  30191909 ctatttataagaaaaaattgattttttagattcattgagtaattgatgtat 30191959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 45828557 - 45828500
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  ||||| ||||||    
T  45828557 ttcggtcctatttataagaaaaaattgattttttagattcattgagtaattaatgtat 45828500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 16412242 - 16412293
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgat 134  Q
    ||||||||||||||||||| |||||| |||||||||||||||  ||||||||    
T  16412242 cggttctatttataagaaaaaattgactttttagattcattgaataattgat 16412293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 55190806 - 55190750
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| ||||||||||||| |||||||   |||||||||||||    
T  55190806 cggtcctatttataagaaaaaattgattttttatattcattcaataattgatgtatc 55190750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 1100913 - 1100960
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| |||| ||||||| |||||||||||| |||||||||    
T  1100913 ttataagaaacatttgactttttaggttcattgtttaagtgatgtatc 1100960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 1205213 - 1205166
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||||||||    
T  1205213 ttataagaaaaaattgattttttatattcattgtctaagtgatgtatc 1205166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 3043931 - 3043876
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||| |||||||||||||| ||||||| |||||||||  || |||||||||    
T  3043931 cggttctatatataagaaacaatttatttttttgattcattgaatagttgatgtat 3043876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 7086262 - 7086215
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| |||| ||||||| |||||||||||| |||||||||    
T  7086262 ttataagaaacatttgactttttaggttcattgtttaagtgatgtatc 7086215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 33010687 - 33010730
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaatt 131  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  33010687 ctatttataagaaaaaattgattttttagattaattgtgtaatt 33010730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 33615910 - 33615863
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| |||||||||| |||||||||||||||| ||| |||||||||    
T  33615910 ttataaaaaacaattgaatttttagattcattgtgtaagtgatgtatc 33615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 43413681 - 43413646
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagat 118  Q
    |||||||||||| |||||||||||||||||||||||    
T  43413681 cggttctatttacaagaaacaattgattttttagat 43413646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 48361060 - 48361115
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| | |||| |||||||||||||||  ||||||||||||    
T  48361060 cggtcctatttataagaaaaatttgactttttagattcattgagtaattgatgtat 48361115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 53225784 - 53225729
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| |||||| |||||||||||||||  ||||| ||||||    
T  53225784 cggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtat 53225729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 4418228 - 4418182
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||| |||||||||||||| |||||||| ||| ||||||||    
T  4418228 ttataagaaaaaattgattttttaggttcattgtgtaagtgatgtat 4418182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 21554243 - 21554193
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| | ||||||||||||||||||||  ||||| ||||||    
T  21554243 ctatttataagaaaaagttgattttttagattcattgagtaattaatgtat 21554193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 23226964 - 23227014
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| |||||| |||||||||||||| | ||||| |||||||    
T  23226964 tatttataagaaaaaattgactttttagattcattatgtaattaatgtatc 23227014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 26066377 - 26066435
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatccg 141  Q
    |||| |||||||||||||| |||||| |||  ||||||||||  |||||||||||||||    
T  26066377 cggtactatttataagaaataattgactttcaagattcattgaataattgatgtatccg 26066435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 29686531 - 29686485
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  29686531 ttataagaaacaattaattttttaaattcattgtataattaatgtat 29686485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 44111879 - 44111829
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| | |||| |||||||||||||||  |||||||||||||    
T  44111879 tatttataagaaaaagttgactttttagattcattgagtaattgatgtatc 44111829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 3043798 - 3043906
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaa 180  Q
    |||||| |||||||||||||| | || ||||||||||||||||   ||||||||||| || |||  ||| ||| | || ||||||| ||| |||||| ||    
T  3043798 ttcggtcctatttataagaaaaagttaattttttagattcattcaataattgatgta-cctagtctaaaaatagaccaaatacatcaactattcaatgaa 3043896  T
Q  181 tctaaaaaat 190  Q
    || |||||||    
T  3043897 tcaaaaaaat 3043906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 13976905 - 13976848
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatcc 140  Q
    |||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||||||    
T  13976905 cggtcctatttctaagaaacaattgactttttaggttcactgggtaattgatgtatcc 13976848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 34226393 - 34226450
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||| ||||||||||| |||||||| | ||||| |||||||||  ||||||||||||    
T  34226393 ttcggatctatttataataaacaatttacttttttgattcattgaataattgatgtat 34226450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 2643614 - 2643670
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||| |||||||||||||| |||||| ||||||| |||||||  ||||| |||||    
T  2643614 ttcggtcctatttataagaaataattgactttttagtttcattgaataatttatgta 2643670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 20957029 - 20956989
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcatt 123  Q
    ||||||||| |||||||||||||| ||||||| ||||||||    
T  20957029 cggttctatatataagaaacaatttatttttttgattcatt 20956989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 41116570 - 41116626
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| | || | |||||||||||||||  |||||||||||||    
T  41116570 cggtcctatttataagaaaaatttaactttttagattcattgagtaattgatgtatc 41116626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 42670899 - 42670863
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattg 124  Q
    |||||||||||||||| |||| |||||||||||||||    
T  42670899 ctatttataagaaacatttgactttttagattcattg 42670863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 53658513 - 53658449
Alignment:
Q  74 cactcatttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||| || ||||||||||||||||||| | || |||||||||||| ||||| ||| | ||||||    
T  53658513 cactccttccggttctatttataagaaaaagttaattttttagatttattgtataactaatgtat 53658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 8566223 - 8566165
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| |||||||||||||| | ||||||||||||||||||||  |||||||||||||    
T  8566223 ttcggtcctatttataagaaaaatttgattttttagattcattgagtaattgatgtatc 8566165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 41863723 - 41863665
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||||    
T  41863723 ttcggttctatttataagaaaaaattgactttttaaattcattgtgtaattaatgtatc 41863665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 40234774 - 40234830
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  40234774 cggttcttattataagaaacaattgactttttagattcattgtgtaactgatgtatc 40234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 36245511 - 36245460
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| |||||| |||||||||||||||  |||||||||||||    
T  36245511 ctatttataagaaaaaattgactttttagattcattgagtaattgatgtatc 36245460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 11668157 - 11668099
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| |||||||||||||| | |||| |||||| |||||||| ||||||||||||||    
T  11668157 ttcggtcctatttataagaaaaatttgactttttacattcattgattaattgatgtatc 11668099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 13860348 - 13860302
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  13860348 ttataagaaacaattgactttttagattcattgtataattaatgtat 13860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 18672106 - 18672156
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||| ||||||    
T  18672106 ctatttacaagaagcaattgattttttagatacattgtttaatttatgtat 18672156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 10007716 - 10007660
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| | |||| |||||||||||||||| ||||| |||||||    
T  10007716 cggtcctatttataagaaaaagttgactttttagattcattgtataattaatgtatc 10007660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 40142913 - 40142857
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  40142913 cggtcctatgtataagaaaaaattgattttttagatttattgtataattaatgtatc 40142857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 10674254 - 10674207
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| |||||||||||||| | ||| |||||||||    
T  10674254 ttataagaaacaattgactttttagattcattatgtaagtgatgtatc 10674207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 22618294 - 22618247
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| ||||||| |||||||| ||| |||||||||    
T  22618294 ttataagaaacaattgactttttaggttcattgtgtaagtgatgtatc 22618247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 28677452 - 28677401
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| |||||| |||||||||| ||||  |||||||||||||    
T  28677452 ctatttataagaaaaaattgactttttagatttattgagtaattgatgtatc 28677401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 39413959 - 39413912
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||||||  |||||||| ||| |||||||||    
T  39413959 ttataagaaacaattgattttttaagttcattgtataagtgatgtatc 39413912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 41487922 - 41487875
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  41487922 ttataagaaacaattgatttttttggttcattgtgtaagtgatgtatc 41487875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 45025725 - 45025678
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| ||||||||||||||||||| | ||| |||||||||    
T  45025725 ttataagaaacatttgattttttagattcattatgtaagtgatgtatc 45025678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 45176627 - 45176560
Alignment:
Q  126 ttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaaaaaatcaa 193  Q
    ||||||||||||||||   | |||||||||||| ||||||| |||||| ||| |||||||||| ||||    
T  45176627 ttaattgatgtatccggtctaaaatatatatcatatacatcaactctttaatgaatctaaaaagtcaa 45176560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 48082813 - 48082863
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| | |||| |||||||||||||||| ||||| |||||||    
T  48082813 tatttataagaaaaagttgactttttagattcattgtgtaattaatgtatc 48082863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 2399966 - 2400015
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||| |||| ||||| |||||||||| ||| ||||||||    
T  2399966 tatttataagaaacatttgacttttttgattcattgtataaatgatgtat 2400015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 4925900 - 4925953
Alignment:
Q  84 ggttctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||||||| | |||| ||||||||||||||   |||||||||||    
T  4925900 ggttctatttataagaaaaatttgactttttagattcattaagtaattgatgta 4925953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 16861530 - 16861575
Alignment:
Q  93 tataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||| |||||||||| |||||||||||||||  ||||||||||||    
T  16861530 tataaaaaacaattgactttttagattcattgaataattgatgtat 16861575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 32811851 - 32811798
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgat 134  Q
    |||||| | |||||||||||| |||| |||||||||||||||||  ||||||||    
T  32811851 ttcggtccaatttataagaaaaaattaattttttagattcattgagtaattgat 32811798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 2610202 - 2610250
Alignment:
Q  90 atttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||| | ||||||||||| ||||||||  ||||||||||||    
T  2610202 atttataagaaaaatttgattttttaaattcattgagtaattgatgtat 2610250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 13807378 - 13807338
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcatt 123  Q
    ||||||||||||||||||||| |||| ||||| ||||||||    
T  13807378 cggttctatttataagaaacatttgacttttttgattcatt 13807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 19512735 - 19512795
Alignment:
Q  79 atttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||| | | |||||||||||||||| |||||| ||||||||  ||||||| |||||    
T  19512735 atttcggttttgtatataagaaacaattgactttttaaattcattgaataattgacgtatc 19512795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 2855217 - 2855115
Alignment:
Q  91 tttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaaaaaat 190  Q
    ||||||| |||||||||| |||||| |||||||||||||||||| |||||    | |||||||||||| ||| |||  ||||||||| ||| |||||| |    
T  2855217 tttataaaaaacaattgactttttaaattcattgtttaattgatatatcccgtctaaaatatatatcaaataaatcatctcttcaataaatttaaaaagt 2855118  T
Q  191 caa 193  Q
    |||    
T  2855117 caa 2855115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 25021371 - 25021313
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatccg 141  Q
    |||||||||||| ||||||||||||| |||||||||| ||||  |||||||||||||||    
T  25021371 cggttctatttacaagaaacaattgactttttagatttattgaataattgatgtatccg 25021313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 27422907 - 27422973
Alignment:
Q  75 actcatttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatccg 141  Q
    |||||||| ||||||||||| ||||||||||||| ||| |||||| |||  ||||||||||||||||    
T  27422907 actcattttggttctatttacaagaaacaattgactttatagatttattaattaattgatgtatccg 27422973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 38040416 - 38040360
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| | |||| ||||||||||||||| ||||||||||||||    
T  38040416 cggtcctatttataagaaaaatttgactttttagattcattgattaattgatgtatc 38040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 7375604 - 7375553
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||| |||||| |||||||||||||||| ||||| |||||||    
T  7375604 ctatttataagaaaaaattgactttttagattcattgtgtaattaatgtatc 7375553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 19998542 - 19998495
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  19998542 ttataagaaacaattgaatttttagattcattgtgtaagtgatgtatc 19998495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 44939200 - 44939150
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||| | ||||||||||||||||||||||  |||||||||||||    
T  44939200 tatttataagagaaaattgattttttagattcattgagtaattgatgtatc 44939150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 25021245 - 25021294
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||||| ||| |||||||||||||||  ||||||||||||    
T  25021245 tatttataagaaacaaatgactttttagattcattgaataattgatgtat 25021294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 33018254 - 33018303
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||||| ||||||||||| ||||||||  |||||||||||    
T  33018254 ctatttataagaaacatttgattttttaaattcattgcataattgatgta 33018303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 15285570 - 15285466
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacatctactcttcaattaatctaaaaa 188  Q
    ||||||||||| ||| ||||||||||||||| ||||  ||||||||||||  ||  |  |||||  |||||||||||| | | |||||| ||||||||||    
T  15285570 tatttataagagacacttgattttttagattgattgaataattgatgtatttgatcttgaatatggatcagatacatcaattattcaataaatctaaaaa 15285471  T
Q  189 atcaa 193  Q
     ||||    
T  15285470 ttcaa 15285466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 13321845 - 13321798
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| ||||||||||||||||||| | ||| |||||||||    
T  13321845 ttataagaaacatttgattttttagattcattatgtaagtgatgtatc 13321798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 18038819 - 18038772
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| ||||| |||| |||||||||||||||||||| |||||||||    
T  18038819 ttataaaaaacatttgactttttagattcattgtttaagtgatgtatc 18038772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 50155438 - 50155383
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| | |||| |||||||||||||||  ||||||||||||    
T  50155438 cggtcctatttataagaaaaagttgactttttagattcattgagtaattgatgtat 50155383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 34146939 - 34146889
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||| |||||||||||| |||||||||  ||||| ||||||    
T  34146939 ctatttataagaaaaaattgatttttttgattcattgaataattaatgtat 34146889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 34174903 - 34174949
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  34174903 ttataagaaacaattgactttttaggttcattgtgtaagtgatgtat 34174949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 26760313 - 26760272
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattg 124  Q
    |||| |||||||||||||| ||||||||||||| ||||||||    
T  26760313 cggtcctatttataagaaaaaattgattttttaaattcattg 26760272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 29892270 - 29892230
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcatt 123  Q
    |||| ||||||||| ||||||||||| ||||||||||||||    
T  29892270 cggtcctatttataggaaacaattgactttttagattcatt 29892230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 38590209 - 38590150
Alignment:
Q  82 tcggttctatttataagaaacaa--ttgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||||||| ||  || | |||||||||||||||  |||||||||||||    
T  38590209 tcggttctatttataagaaaaaaaattaactttttagattcattgagtaattgatgtatc 38590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 38738071 - 38738015
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| | || | |||||||||||||||  |||||||||||||    
T  38738071 cggtcctatttataagaaaaatttaactttttagattcattgagtaattgatgtatc 38738015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 49944841 - 49944897
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||| |||||||||||||| | || | |||||||||||||||  |||||||||||||    
T  49944841 cggtcctatttataagaaaaatttaactttttagattcattgaataattgatgtatc 49944897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 24599798 - 24599753
Alignment:
Q  94 ataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  24599798 ataagaaacaattgattttttagattcattgtataactgatgtatc 24599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 9633081 - 9633145
Alignment:
Q  75 actcatttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| ||  |||||||||||||||||  ||||||||||||||| ||||| |||||||    
T  9633081 actcatttcggtccttattataagaaacaattgacgttttagattcattgtataattaatgtatc 9633145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 30734535 - 30734582
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||    
T  30734535 ttataagaaacaaattattttttagattcattgtgtaattgatgtatc 30734582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 35149810 - 35149752
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||| |||||||||||||| | ||||||||||||||| ||||| ||||| |||||||    
T  35149810 ttcggtcctatttataagaaaaagttgattttttagatttattgtgtaattaatgtatc 35149752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 6354782 - 6354705
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgtatccgagttgaaatatatatcagatacat 165  Q
    |||||||||||||| |||| |||||||||||||||||  ||||| |||||| |||  |  ||||||||||| ||||||    
T  6354782 ctatttataagaaataattaattttttagattcattgaataatttatgtattcgatctagaatatatatcatatacat 6354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 7693173 - 7693118
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| |||||| |||||||||||||||  ||||| ||||||    
T  7693173 cggtcctatttataagaaaaaattgactttttagattcattgagtaattaatgtat 7693118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 8793727 - 8793782
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||||||||||||||| || | ||||| ||||||||||||||  ||||||||||||    
T  8793727 cggttctatttataagtaaaagttgatattttagattcattgagtaattgatgtat 8793782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 24822863 - 24822808
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    |||| |||||||||||||| |||||| |||||||||| ||||| ||||| ||||||    
T  24822863 cggtcctatttataagaaaaaattgactttttagatttattgtataattaatgtat 24822808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 34604912 - 34604865
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  34604912 ttataagaaacaattgatttttttggttcattgtataagtgatgtatc 34604865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 34745388 - 34745341
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||| ||||||||||||||||||| | ||| |||||||||    
T  34745388 ttataagaaacatttgattttttagattcattatgtaagtgatgtatc 34745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 38298632 - 38298585
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||||||||| |||||||  ||||| |||||||    
T  38298632 ttataagaaacaattgattttttaggttcattgaataattaatgtatc 38298585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 43932180 - 43932133
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| |||||||||||||||  ||||| |||||||    
T  43932180 ttataagaaacaattgactttttagattcattgaataattaatgtatc 43932133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 1223137 - 1223187
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||| || ||| |||||||||||||||| ||||| |||||||    
T  1223137 tatttataagaaaaaagtgactttttagattcattgtgtaattaatgtatc 1223187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 10184685 - 10184636
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||| ||| || |||||||||||||||  ||||||||||||    
T  10184685 tatttataagaaaaaatcgactttttagattcattgaataattgatgtat 10184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 10839776 - 10839825
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattgatgta 137  Q
    |||||||||||||| |||||| |||||||||||||||  ||||| |||||    
T  10839776 ctatttataagaaaaaattgactttttagattcattgaataattaatgta 10839825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 15726894 - 15726849
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattgtttaattga 133  Q
    |||||||||||||| |||||| |||||||||||||||  |||||||    
T  15726894 ctatttataagaaaaaattgactttttagattcattgagtaattga 15726849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 26268045 - 26268078
Alignment:
Q  97 agaaacaattgattttttagattcattgtttaat 130  Q
    ||||||||||||||||||||||||||||| ||||    
T  26268045 agaaacaattgattttttagattcattgtgtaat 26268078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 34711095 - 34711144
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||| ||| |||||| |||||||||||||||  ||||||||||||    
T  34711095 tatttataaaaaaaaattgactttttagattcattgagtaattgatgtat 34711144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 1666 - 1617
Alignment:
Q  89 tatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||| |||| |||||||||||||||||  ||||||||||||    
T  1666 tatttataagaaaaaattaattttttagattcattgaataattgatgtat 1617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 3064891 - 3064947
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||||| ||||   |||||||||||||||| ||||| |||||||    
T  3064891 cggttctatttataagaaaaaattatctttttagattcattgtataattaatgtatc 3064947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 28630888 - 28630852
Alignment:
Q  88 ctatttataagaaacaattgattttttagattcattg 124  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28630888 ctatttataagaaacaattgactttttagattcattg 28630852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 23916258 - 23916225
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgt 125  Q
    ||||||||||||||||| ||||||||||||||||    
T  23916258 ttataagaaacaattgactttttagattcattgt 23916225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 30627965 - 30627908
Alignment:
Q  81 ttcggttctatttataagaaacaattgattttttagattcattgtttaattgatgtat 138  Q
    ||||||||||||||||||||||| |||| ||||  |||||||||  ||| ||||||||    
T  30627965 ttcggttctatttataagaaacatttgacttttctgattcattgcataaatgatgtat 30627908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 1301932 - 1301964
Alignment:
Q  91 tttataagaaacaattgattttttagattcatt 123  Q
    |||||||||||||||||||||||||||| ||||    
T  1301932 tttataagaaacaattgattttttagatacatt 1301964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 33120042 - 33119986
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||||||   |||| |||||||||||||||  |||| ||||||||    
T  33120042 cggttctatttataagaaaattttgactttttagattcattgaataatcgatgtatc 33119986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 3940 - 3893
Alignment:
Q  92 ttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    ||||||||||||||||| ||||||| |||||||| ||| |||||||||    
T  3940 ttataagaaacaattgactttttaggttcattgtgtaagtgatgtatc 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 40153 - 40209
Alignment:
Q  83 cggttctatttataagaaacaattgattttttagattcattgtttaattgatgtatc 139  Q
    |||||||||||||||| || |||| | | |||||||||||| | |||||||||||||    
T  40153 cggttctatttataaggaaaaattaactctttagattcattatgtaattgatgtatc 40209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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