View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_high_39 (Length: 243)
Name: NF1589_high_39
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41803380 - 41803606
Alignment:
| Q |
18 |
atcctcgagactagttccacatccatctcaatcacactaacacatgaaataaaaaagaaaccatgtggatgtg-----gtgtggtgtcttgaagacatgc |
112 |
Q |
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| T |
41803380 |
atcctcgagactagttccacatccatctcaatcacactaacacatgaaataaaaaagaaaccatgtggatgtggtgtggtgtggtgtcttgaagacatgc |
41803479 |
T |
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| Q |
113 |
aaacctttattcgtatgacacatatgacaagtgatgacaaatgcataattgatgacttgaaagtctcatcataaattttcatcaattaaccgcttatgtt |
212 |
Q |
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| T |
41803480 |
aaacctttattcgtatgacacatatgacaagtgatgacaaatgcataattgatgacttgaaagtctcatcataaatttttatcaattaaccgcttatgtt |
41803579 |
T |
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| Q |
213 |
atatcattacgagaaattgtaatgaat |
239 |
Q |
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| T |
41803580 |
atatctttacgagaaatgttaatgaat |
41803606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 3383218 - 3383326
Alignment:
| Q |
19 |
tcctcgagactagttccacatccatctcaatcacactaacacatgaaataaaaaagaaaccatgtggatgtggtgtggtgtcttgaagacatgcaaacct |
118 |
Q |
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||||||| |||||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
3383218 |
tcctcgatactagtaccacatccatctcaatcacagtaccatatgaaataaaaaagaaaccatgtg-----ggtgtggtgtcttgaagacatgcaaacat |
3383312 |
T |
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| Q |
119 |
ttattcgtatgaca |
132 |
Q |
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| T |
3383313 |
ttattcatatgaca |
3383326 |
T |
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