View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_1 (Length: 824)
Name: NF1589_low_1
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 2559670 - 2559130
Alignment:
| Q |
16 |
tctacaacccaaatgtaggccacaatcgtgccaaatgtttcaaaacactggaatcatttgctttcgcaaccatacgatcaacatgaaactcatctcgcgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559670 |
tctacaacccaaatgtaggccacaatcgtgccaaatgtttcaaaacactggaatcatttgctttcgcaaccatacgatcaacatgaaactcatctcgcgc |
2559571 |
T |
|
| Q |
116 |
aaactttcccctcaacacttcatatcataa---attaccacctctgcaaatagcccaaccgagtttcattagacaagcttcattcattttttaccaacct |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559570 |
aaactttcccctcaacacttcatatcataacttattaccacctctgcaaatagcccaaccgagtttcattagacaagcttcattcattttttaccaacct |
2559471 |
T |
|
| Q |
213 |
tcgtaaccccaaacttctaaaattaaatattccggcattgttactgttctccaaattcaccgtactatgctttctggaattctcaccgccacacctcctt |
312 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
2559470 |
tcgtaaccccaaacttctaaaattaaatatttcggcattgttactgttctccaaattcactgcactatgctttctggaattctcaccgccacacctcctt |
2559371 |
T |
|
| Q |
313 |
tcttttttgcttgattatatttatctgtatcattgaaatcacaaaccaactactaaccaagcaccactagctaataccatttcctatcaaccttagatcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559370 |
tcttttttgcttgattatatttatctgtatcattgaaatcacaaaccaactactaaccaagcaccactagctaataccatttcctatcaaccttagatcc |
2559271 |
T |
|
| Q |
413 |
tcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcggtccttcgtataatagtaagtatgccggttttataaaaaataaa |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2559270 |
tcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcagtccttcgtataatagtaagtatgccggttttatcaaaaataaa |
2559171 |
T |
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| Q |
513 |
acatcaaatctaacgagacacgtgcaataccataacctgtc |
553 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2559170 |
acatcaaatctaacgagacacatgcaataccataacctgtc |
2559130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 549 - 820
Target Start/End: Complemental strand, 2559077 - 2558806
Alignment:
| Q |
549 |
ctgtcgtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat |
648 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559077 |
ctgtagtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat |
2558978 |
T |
|
| Q |
649 |
ttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctga |
748 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
2558977 |
tccttctatttcaattattacttcacttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttga |
2558878 |
T |
|
| Q |
749 |
gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgctt |
820 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558877 |
gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgctt |
2558806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 500
Target Start/End: Complemental strand, 2551656 - 2551548
Alignment:
| Q |
391 |
atttcctatcaaccttagatcctcctacagacttcattgcaagtcttcacttggactagtaatacgaaggatttttcggtccttcgtataatagtaagta |
490 |
Q |
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|||| ||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||| ||| |||| |||||| ||||||| ||||| |||||||| |
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| T |
2551656 |
atttgctatcaatctta-atcctcctacatacttcattggaagtcttcacttggactagtgataagaagaatttttaggtcctttatataacagtaagta |
2551558 |
T |
|
| Q |
491 |
tgccggtttt |
500 |
Q |
| |
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|||| ||||| |
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| T |
2551557 |
tgccagtttt |
2551548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 597 - 689
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
| Q |
597 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata |
689 |
Q |
| |
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||||||| |||| ||||||||||||||| | |||||||||||||||||| | ||| |||||||||||||||| || ||||||||| |||| |
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| T |
25642353 |
attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata |
25642261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
| Q |
597 |
attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
666 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||| ||||||||||||| | ||| |||||||||||| |
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| T |
18997740 |
attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat |
18997671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 702
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
| Q |
604 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct |
702 |
Q |
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|||| |||||| | |||||||||||||||| ||| |||||||| | || |||||||||||||| ||||| | ||||| || ||||||| ||||||| |
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| T |
10169270 |
tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct |
10169172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 657
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
| Q |
604 |
tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat |
657 |
Q |
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|
||||||||||| || ||||||| |||||||||||||| |||||| ||| ||||| |
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| T |
29277840 |
tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat |
29277893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 666
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
| Q |
600 |
aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat |
666 |
Q |
| |
|
|||||| |||||||| || | |||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
35246938 |
aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat |
35246872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
| Q |
658 |
ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga |
711 |
Q |
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| T |
34049464 |
ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga |
34049411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 735 - 817
Target Start/End: Original strand, 21602398 - 21602479
Alignment:
| Q |
735 |
acttccgttgctgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg |
817 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||| ||||| |||| ||| || ||||| | |||||||| |||||||| |
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| T |
21602398 |
acttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt-aatatgattgcaaacctaaccctatg |
21602479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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