View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_12 (Length: 409)
Name: NF1589_low_12
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 39058365 - 39058004
Alignment:
| Q |
18 |
tataggtcctaggatcattgggtagtcagaggttggtgaaagcatttttccttctttgacatcctcttctttatatgatgtatcttctgttcttgtaagg |
117 |
Q |
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| T |
39058365 |
tatatgtcctaggatcattgggtagtcagaggttggtgaaagcatttttccttctttgacatcctcttctttatatgatgtatcttctgttcttgtaagg |
39058266 |
T |
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| Q |
118 |
agttactctccattgcttttgtcagtaaaattcaatggctaacaaacaacatacccctcttagaataaatgaaatatttgtcaaacatgaataatagcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39058265 |
agttactctccattgcttttgtcagtaaaattcaatggctaacaaacaacatacccctcttagaataaatgaaatatttgtcaatcatgaataatagcta |
39058166 |
T |
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| Q |
218 |
caaccatacaacaacagcaacagcaacacaatataaacttgtaacagacataattaacattataaattagtaaacactctttagtaaaaaagaatagaga |
317 |
Q |
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| T |
39058165 |
caa--------------------caacacaatataaacttgtagcagacataattaacattataaattagtaaacactctttagtaaaaaagaatagaga |
39058086 |
T |
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| Q |
318 |
gacgtacccatcccaggaacttgatagtcgttaacaatttcaaagttcttgtatgtatatccaacaaaatttatgtcctttg |
399 |
Q |
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| T |
39058085 |
gacgtacccatcccaggaacttgatagtcgttaacaatttcaaagttcttgtatgtatatccaacaaaatttatgtcctttg |
39058004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 30390067 - 30390138
Alignment:
| Q |
319 |
acgtacccatcccaggaacttgatagtcgttaacaatttcaaagttcttgtatgtatatccaacaaaattta |
390 |
Q |
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| T |
30390067 |
acgtacccatcccaggaacttgataatcgttaacaatttcaaagttcttgtatgtgtatccaacaaaattta |
30390138 |
T |
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