View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1589_low_14 (Length: 401)

Name: NF1589_low_14
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1589_low_14
NF1589_low_14
[»] chr8 (1 HSPs)
chr8 (9-385)||(35798126-35798501)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 35798501 - 35798126
Alignment:
Q  9 agcaaaggattgtgtcttatggcccgcacgtgtcataggatgttgtgattagctagcatatatgctttatatttctttcaacattcgagtatattgttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35798501 agcaaaggattgtgtcttatggcccgcacgtgtcataggatgttgtgattagctagcatatatgctttatatttctttcaatattcgagtatattgttaa 35798402  T
Q  109 acnnnnnnnnttaaatctttcaaacatttacaggacannnnnnnncatgtgtttgaatgatcttataattt-cttgcaatataaccacttattccatcct 207  Q
    ||        |||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35798401 acaaaaaaaattaaatctttcaaacatttacaggacattttttttcatgtgtttgaatgatcttataattttcttgcaatataaccacttattccatcct 35798302  T
Q  208 ctttnnnnnnnnnnnnnnnnnnctccttccataatttgtaggagagnnnnnnnngttggaaagctaaagacaaacgaaacaaaacaaagagaaatgcaac 307  Q
    ||||                  |||||| |||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||| |||    
T  35798301 ctttaaaaaaaaaaaaaaaa--ctccttgcataatttgtaggagagttttttttgttggaaagctaaagacaaacaaaacaaaacaaagagaaatgaaac 35798204  T
Q  308 aagctcttgggaaccaagtttccatagtctcacaaaggaggggtggaccaagacattaaagttagaagaagcacttat 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35798203 aagctcttgggaaccaagtttccatagtctcacaaaggaggggtggaccaagacattaaagttagaagaagcacttat 35798126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University