View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1589_low_17 (Length: 380)
Name: NF1589_low_17
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 22364259 - 22364610
Alignment:
| Q |
11 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364259 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
22364358 |
T |
|
| Q |
111 |
cctacggtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggaccccatgcaaaatattgc |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22364359 |
cctacagtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggaccccatgcaaactattgc |
22364458 |
T |
|
| Q |
211 |
atgaccggtttatgtaatggagtgttgtacattgtaaatgatcgaatattatcgtggggtggaacnnnnnnnccttcataagtttgtttaaatacacata |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
22364459 |
atgatcggtttatgtaatggagtgttgtacattgtaaatgatctaatattatcgtggggtggaa-tttttttccttcataagtttgtttagatacacata |
22364557 |
T |
|
| Q |
311 |
agtttcaagattttcacaattcaaacaaactcttaactatgaataagaggttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22364558 |
agtttcaagattttcacaattcaaacaaactcttaactatgaattagaggttt |
22364610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University