View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1589_low_18 (Length: 379)
Name: NF1589_low_18
Description: NF1589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1589_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 4116638 - 4116989
Alignment:
| Q |
12 |
atgaagacctgtaaaatgtacacaacttagtttcatgagcttatatactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagggatgtc |
111 |
Q |
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| T |
4116638 |
atgaagacctgtaaaatgtacacaacttagtttcatgagcttatagactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagtgatgtc |
4116737 |
T |
|
| Q |
112 |
gaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116738 |
gaccattgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttcc |
4116837 |
T |
|
| Q |
212 |
gaaaatcaaaatccctcgctatagtctataagtggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataa |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116838 |
gaaaatcaaaatccctcgctatagtctataagaggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataa |
4116937 |
T |
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| Q |
312 |
ataacctgctctggtcactgcacatcagacataaatatctatttgacgctct |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116938 |
ataacctgctctggtcactgcacatcagacataaatatctatttgacgctct |
4116989 |
T |
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